Gene omics information

Query gene ID	HZ42D16r_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	HZ42D16r_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.67	84.7	HZ42D16r_s_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.67	84.7	Contig546_at	Contig546	-	-	2e-17	At4g34110	PAB2 (POLY(A) BINDING 2)	S.X.	H.G.	Please select
0.50	66.9	EBem08_SQ002_D16_s_at	EBem08_SQ002_D16	-	-	2e-4	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.25	28.9	Contig2575_s_at	Contig2575	-	-	2e-1	At4g27540	PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)	S.X.	H.G.	Please select
0.04	3.4	HU09E20u_s_at	HU09E20u	-	-	3e+0	At3g55820	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	98.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.0	97.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.4	96.6	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	960	HZ42D16r_s_at	HZ42D16r	-	-	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.67	0	783	Contig5466_s_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.67	0	783	Contig5466_at	Contig5466	-	-	3e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.59	8e-145	511	EBem08_SQ002_D16_s_at	EBem08_SQ002_D16	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.35	7e-59	226	Contig5465_at	Contig5465	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.30	1e-38	159	HS08H05u_at	HS08H05u	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig12994_at	Contig12994	-	-	4e-5	At1g14620	DECOY (DECOY)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig9891_at	Contig9891	-	-	9e-10	At5g19150	carbohydrate kinase family	C.G.	S.X.	Please select
0.01	1e-1	36	Contig11491_at	Contig11491	-	-	6e-2	At3g58460	ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-3	42	Arabidopsis thaliana	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	3e-14	79	Glycine max	Gma.5350.1.S1_s_at	AW351218	-	-	6e-18	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.31	1e-48	194	Oryza sativa	Os12g0103300	AU222596	-	Protein transport protein SEC61 beta subunit	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-5	50	Populus trichocarpa	PtpAffx.18075.1.S1_at	CV278430	-	-	2e-12	At5g60460	sec61beta family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.61	3e-109	395	Triticum aestivum	Ta.13162.1.S1_at	CK200289	-	-	5e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.09	2e-8	57	Vitis vinifera	1611813_s_at	BQ794797	hypothetical protein LOC100260422	-	1e-6	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.28	7e-40	163	Zea mays	Zm.16986.1.S1_at	CF632581	protein transport protein Sec61 beta subunit	-	2e-2	At5g60460	sec61beta family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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