Gene omics information

Query gene ID	HY08D02u_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	62.2	HY08D02u_s_at	HY08D02u	-	-	6e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	S.X.	H.G.	Please select
0.67	84.7	Contig5724_at	Contig5724	-	-	4e-12	At1g06570	PDS1 (PHYTOENE DESATURATION 1)	S.X.	H.G.	Please select
0.64	80.9	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	S.X.	H.G.	Please select
0.61	78.7	Contig4296_at	Contig4296	-	-	5e-38	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	S.X.	H.G.	Please select
0.61	78.7	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select
0.58	74.9	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please select
0.57	74.9	Contig3263_at	Contig3263	-	-	9e-38	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	S.X.	H.G.	Please select
0.54	70.3	Contig6203_at	Contig6203	-	-	1e-3	At1g70110	lectin protein kinase family protein	S.X.	H.G.	Please select
0.50	66.9	Contig4302_at	Contig4302	-	-	8e-2	At5g48640	cyclin family protein	S.X.	H.G.	Please select
0.48	63.2	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	96.4	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.2	96.3	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.4	94.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
3.2	94.3	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.2	94.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	2e-103	373	HY08D02u_x_at	HY08D02u	-	-	6e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	C.G.	S.X.	Please select
0.35	5e-82	301	Contig3293_at	Contig3293	-	-	2e-15	At1g60740	peroxiredoxin type 2, putative	C.G.	S.X.	Please select
0.32	1e-36	151	rbags18j12_s_at	rbags18j12	-	-	3e-6	At1g65980	TPX1 (thioredoxin-dependent peroxidase 1)	C.G.	S.X.	Please select
0.04	5e-2	36	Contig7519_at	Contig7519	-	-	1e-13	At1g03150	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.02	2e-1	34	Contig14177_at	Contig14177	-	-	6e-2	At2g04520	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select
0.03	7e-1	32	Contig15789_at	Contig15789	-	-	6e-6	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	C.G.	S.X.	Please select
0.03	3e+0	30	Contig7992_at	Contig7992	-	-	1e-1	At3g63310	glutamate binding	C.G.	S.X.	Please select
0.04	3e+0	30	Contig16285_at	Contig16285	-	-	8e-2	At4g31390	ABC1 family protein	C.G.	S.X.	Please select
0.04	3e+0	30	AF052396_at	AF052396	-	-	1e+0	At5g64830	programmed cell death 2 C-terminal domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	30	Arabidopsis thaliana	At2g31180	817674	MYB14 (MYB DOMAIN PROTEIN 14)	Member of the R2R3 factor gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	36	Glycine max	Gma.8346.1.A1_at	BU550789	-	-	1e-22	At1g08550	NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1)	C.G.	S.X.	Please select
0.10	2e-4	46	Oryza sativa	Os01g0675100	AF203879.1	-	Peroxiredoxin	4e-1	At1g65970	TPX2 (thioredoxin-dependent peroxidase 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e+0	30	Populus trichocarpa	PtpAffx.66799.1.S1_at	DN495381	-	-	1e+0	At2g34050	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	4e-7	54	Triticum aestivum	Ta.13749.1.S1_x_at	CD870298	-	-	2e-4	At1g60740	peroxiredoxin type 2, putative	C.G.	S.X.	Please select
0.05	4e-1	32	Vitis vinifera	1621507_s_at	AY256862.1	GAI1	-	6e-5	At3g03450	RGL2 (RGA-LIKE 2)	C.G.	S.X.	Please select
0.03	3e-3	40	Zea mays	Zm.925.1.A1_at	AW067104	-	-	1e-4	At5g56790	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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