Gene omics information

Query gene ID	HY04C04u_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	HY04C04u_at	HY04C04u	-	-	7e-1	At1g09490	cinnamyl-alcohol dehydrogenase family / CAD family	S.X.	H.G.	Please select
0.80	92.5	HW06C04u_x_at	HW06C04u	-	-	7e+0	At3g05980	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig14732_at	Contig14732	-	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	S.X.	H.G.	Please select
0.53	69.7	HW09H11u_at	HW09H11u	-	-	2e-1	At1g17510	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig4579_s_at	Contig4579	-	-	2e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	S.X.	H.G.	Please select
0.20	21.1	HT12H07u_x_at	HT12H07u	-	-	8e+0	At5g64552	CPuORF22 (Conserved peptide upstream open reading frame 22)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.4	99.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
20.3	99.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
19.9	99.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
19.8	99.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
15.5	99.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.7	95.5	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4	94.8	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	684	HY04C04u_s_at	HY04C04u	-	-	7e-1	At1g09490	cinnamyl-alcohol dehydrogenase family / CAD family	C.G.	S.X.	Please select
0.34	6e-154	541	Contig10705_at	Contig10705	-	-	9e-13	At3g56850	AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.47	4e-50	196	HVSMEi0002J01r2_x_at	HVSMEi0002J01r2	-	-	6e+0	At4g39150	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.47	4e-50	196	HVSMEi0002J01r2_at	HVSMEi0002J01r2	-	-	6e+0	At4g39150	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.05	3e-1	34	HVSMEn0014H06r2_s_at	HVSMEn0014H06r2	-	-	4e-2	At3g02150	PTF1 (PLASTID TRANSCRIPTION FACTOR 1)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig11018_at	Contig11018	-	-	1e-48	At3g25140	QUA1 (QUASIMODO 1)	C.G.	S.X.	Please select
0.01	1e+0	32	Contig10597_at	Contig10597	-	-	2e-11	At5g19500	tryptophan/tyrosine permease family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig11553_at	Contig11553	-	-	2e-4	At1g15860	-	C.G.	S.X.	Please select
0.03	1e+0	32	Contig10035_at	Contig10035	-	-	5e+0	Atmg00070	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-1	34	Arabidopsis thaliana	At1g09490	837474	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e+0	32	Glycine max	GmaAffx.47108.1.S1_at	BF010253	-	-	2e+0	At2g11270	citrate synthase-related	C.G.	S.X.	Please select
0.04	3e-1	36	Oryza sativa	OsAffx.4392.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.207024.1.S1_s_at	pmrna13916	hypothetical protein	-	3e+0	At4g23760	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	7e-38	157	Triticum aestivum	Ta.29331.2.S1_x_at	CA611511	FD-like 6 protein	-	1e+1	At5g06280	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1614454_at	CF403178	hypothetical protein LOC100257651	-	4e+0	At2g15640	F-box family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	ZmAffx.556.1.A1_at	AI714513	-	-	1e+1	At4g23900	nucleoside diphosphate kinase 4 (NDK4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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