Gene omics information

Query gene ID	HY02C19u_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	S.X.	H.G.	Please select
0.55	72.0	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	S.X.	H.G.	Please select
0.55	72.0	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	S.X.	H.G.	Please select
0.55	72.0	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	S.X.	H.G.	Please select
0.53	69.7	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.0	GSM261051	Bonus Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.9	95.8	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
3.9	95.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.9	95.8	GSM68896	8 h control replicate 2	GSE3097	Barley1 salinity stress study
3.9	95.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.9	95.8	GSM160819	38% SWC rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	8e-62	234	Contig2722_at	Contig2722	-	-	2e-32	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.03	3e-3	40	Contig14003_at	Contig14003	-	-	4e-82	At5g14040	mitochondrial phosphate transporter	C.G.	S.X.	Please select
0.03	2e-1	34	Contig10403_s_at	Contig10403	-	-	2e+0	At5g01520	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e-1	34	Contig10403_at	Contig10403	-	-	2e+0	At5g01520	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	6e-1	32	Contig18085_at	Contig18085	-	-	4e-11	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.03	6e-1	32	Contig8035_at	Contig8035	-	-	4e-2	At4g14930	acid phosphatase survival protein SurE, putative	C.G.	S.X.	Please select
0.02	6e-1	32	Contig4830_at	Contig4830	-	-	6e-8	At4g34240	ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1)	C.G.	S.X.	Please select
0.02	2e+0	30	Contig18099_at	Contig18099	-	-	5e-1	At5g15950	adenosylmethionine decarboxylase family protein	C.G.	S.X.	Please select
0.03	2e+0	30	Contig11651_at	Contig11651	-	-	2e-6	At2g19870	tRNA/rRNA methyltransferase (SpoU) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	30	Arabidopsis thaliana	At4g15610	827238	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	32	Glycine max	GmaAffx.83547.1.S1_at	BU577013	-	-	6e-8	At5g24940	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.05	1e+1	30	Oryza sativa	OsAffx.8589.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e+0	32	Populus trichocarpa	PtpAffx.154035.1.A1_at	CV232084	hypothetical protein	-	1e-3	At4g21540	SPHK1 (SPHINGOSINE KINASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	5e-25	113	Triticum aestivum	Ta.14480.2.S1_at	BU099921	-	-	3e-28	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.05	4e-1	32	Vitis vinifera	1614124_at	CF515862	-	-	4e+0	At5g43245	unknown protein	C.G.	S.X.	Please select
0.08	5e-1	32	Zea mays	ZmAffx.1069.1.A1_at	AI941949	RING-H2 finger protein ATL2K	-	6e+0	At5g12380	annexin, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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