Gene omics information

Query gene ID	HX08J20r_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	HX08J20r_s_at	HX08J20r	-	-	2e+0	At4g15920	-	S.X.	H.G.	Please select
0.50	66.9	HX08J20r_at	HX08J20r	-	-	2e+0	At4g15920	-	S.X.	H.G.	Please select
0.35	45.1	Contig18246_at	Contig18246	-	-	2e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	S.X.	H.G.	Please select
0.30	37.0	Contig17534_at	Contig17534	-	-	1e-5	At4g01040	glycosyl hydrolase family 18 protein	S.X.	H.G.	Please select
0.30	37.0	Contig1493_at	Contig1493	-	-	8e-12	At4g25740	40S ribosomal protein S10 (RPS10A)	S.X.	H.G.	Please select
0.25	28.9	Contig235_at	Contig235	-	-	7e-35	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.20	21.1	Contig1517_at	Contig1517	-	-	2e-2	At5g39120	germin-like protein, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.2	99.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.9	99.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.4	99.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	6e-169	591	HX08J20r_at	HX08J20r	-	-	2e+0	At4g15920	-	C.G.	S.X.	Please select
0.26	2e-135	480	Contig13297_at	Contig13297	-	-	3e-16	At3g66658	ALDH22a1 (Aldehyde Dehydrogenase 22a1)	C.G.	S.X.	Please select
0.04	7e-2	36	HVSMEg0005G16r2_at	HVSMEg0005G16r2	-	-	5e+0	At5g57410	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	baak1e23_at	baak1e23	-	-	4e+0	At4g29103	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Contig2142_s_at	Contig2142	plastocyanin precursor	-	1e+0	At1g20340	DRT112	C.G.	S.X.	Please select
0.01	1e+0	32	Contig8209_at	Contig8209	-	-	1e+0	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig16779_at	Contig16779	-	-	1e-1	At4g30630	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig15378_at	Contig15378	-	-	8e-10	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	C.G.	S.X.	Please select
0.01	5e+0	30	Contig6652_at	Contig6652	-	-	2e-61	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At4g15920	827274	-	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+1	30	Glycine max	PsAffx.psZS008xA24f_at	PsAffx.psZS008xA24f	-	-	3e+0	At2g02380	ATGSTZ2	C.G.	S.X.	Please select
0.05	5e+0	32	Oryza sativa	Os08g0404700	9636.m03122	-	-	3e-2	At3g15040	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.12675.5.A1_at	CV276882	-	-	4e-25	At3g56240	CCH (COPPER CHAPERONE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e+0	32	Triticum aestivum	Ta.21705.2.S1_a_at	CA677824	-	-	8e+0	At5g03370	acylphosphatase family	C.G.	S.X.	Please select
0.05	7e-1	32	Vitis vinifera	1607479_at	CB981260	-	-	5e-2	At3g26180	CYP71B20	C.G.	S.X.	Please select
0.04	7e-2	36	Zea mays	Zm.15379.1.A1_at	BG842487	-	-	5e+0	At2g30424	TCL2 (TRICHOMELESS 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage