Gene omics information

Query gene ID	HX05P09r_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	HX05P09r_at	HX05P09r	-	-	9e-1	At5g60350	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Contig17982_at	Contig17982	-	-	2e+1	At5g05340	peroxidase, putative	S.X.	H.G.	Please select
0.75	89.5	HA07k01r_at	HA07k01r	-	-	1e+0	At3g48640	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig2339_at	Contig2339	-	-	5e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	S.X.	H.G.	Please select
0.63	80.3	Contig9561_at	Contig9561	-	-	1e+1	At4g15780	ATVAMP724	S.X.	H.G.	Please select
0.50	66.9	Contig17012_at	Contig17012	-	-	2e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.47	62.2	Contig12675_s_at	Contig12675	-	-	1e+0	At4g28150	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
105.9	100.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
61.7	100.0	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
39.6	99.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
38.0	99.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
22.8	99.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
21.9	99.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.2	90.3	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
2.2	90.3	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.1	89.7	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-3	42	Contig9274_s_at	Contig9274	-	-	6e-12	At2g24090	ribosomal protein L35 family protein	C.G.	S.X.	Please select
0.04	2e-3	42	Contig9274_at	Contig9274	-	-	6e-12	At2g24090	ribosomal protein L35 family protein	C.G.	S.X.	Please select
0.03	3e-2	38	Contig18808_s_at	Contig18808	-	-	2e-2	At1g04260	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)	C.G.	S.X.	Please select
0.04	3e-2	38	Contig8548_at	Contig8548	-	-	6e-3	At5g45680	FK506-binding protein 1 (FKBP13)	C.G.	S.X.	Please select
0.03	1e-1	36	Contig4115_at	Contig4115	-	-	2e+0	At2g36895	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig16643_at	Contig16643	-	-	2e-9	At4g29660	EMB2752 (EMBRYO DEFECTIVE 2752)	C.G.	S.X.	Please select
0.04	1e-1	36	Contig6015_at	Contig6015	-	-	1e+0	At3g55880	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig4115_s_at	Contig4115	-	-	2e+0	At2g36895	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig7420_at	Contig7420	-	-	1e-5	At4g15470	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-1	34	Arabidopsis thaliana	At5g60350	836157	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	GmaAffx.35629.1.S1_at	BG839460	-	-	4e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	C.G.	S.X.	Please select
0.03	2e-3	44	Oryza sativa	Os08g0437300	9636.m03403	-	Conserved hypothetical protein	5e-7	At4g38620	MYB4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.5349.1.A1_at	CV252629	-	-	3e+0	At5g41660	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	7e-48	190	Triticum aestivum	Ta.10899.1.A1_at	BQ166788	-	-	2e-1	At2g02060	transcription factor	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1613437_at	CF202922.1	-	-	8e-4	At1g12960	60S ribosomal protein L27A (RPL27aA)	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.11904.1.A1_at	CF634524	disease resistance response protein 206	-	1e+0	At4g17615	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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