Gene omics information

Query gene ID	HW05K01u_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HW05K01u_at	HW05K01u	-	-	9e-1	At3g15150	zinc ion binding	S.X.	H.G.	Please select
0.46	61.0	Contig19576_x_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	S.X.	H.G.	Please select
0.36	47.1	Contig16630_at	Contig16630	-	-	1e+0	At1g31250	proline-rich family protein	S.X.	H.G.	Please select
0.29	35.5	Contig1188_s_at	Contig1188	amylase/protease inhibitor	-	6e+0	At5g05120	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.23	26.1	EBem05_SQ003_O06_at	EBem05_SQ003_O06	-	-	1e+0	At2g17380	AP19	S.X.	H.G.	Please select
0.18	18.2	Contig16579_at	Contig16579	-	-	2e+0	At4g14695	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	97.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	32	Contig5702_at	Contig5702	-	-	2e+0	At2g35950	EDA12 (embryo sac development arrest 12)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig12902_at	Contig12902	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	C.G.	S.X.	Please select
0.03	2e+0	32	Contig21253_at	Contig21253	-	-	2e+1	At5g17165	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig6272_s_at	Contig6272	-	-	1e-9	At3g52120	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.03	7e+0	30	HVSMEl0009B19r2_s_at	HVSMEl0009B19r2	-	-	1e+0	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig8468_at	Contig8468	-	-	1e-12	At4g33050	EDA39 (embryo sac development arrest 39)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig15918_at	Contig15918	-	-	2e+0	At5g43285	-	C.G.	S.X.	Please select
0.02	7e+0	30	Contig14701_at	Contig14701	-	-	2e+0	At2g22200	AP2 domain-containing transcription factor	C.G.	S.X.	Please select
0.02	7e+0	30	Contig1813_s_at	Contig1813	-	-	1e-121	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-1	34	Arabidopsis thaliana	At3g15150	820746	zinc ion binding	F:zinc ion binding;P:unknown;C:unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.45232.1.A1_at	BU547931	-	-	3e-1	At3g20620	F-box family protein-related	C.G.	S.X.	Please select
0.02	3e-8	59	Oryza sativa	Os11g0160700	AK073141.1	-	FYVE/PHD zinc finger domain containing protein	4e-1	At3g10790	F-box family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-2	38	Populus trichocarpa	PtpAffx.207968.1.S1_at	pmrna15822	hypothetical protein	-	1e+0	At5g49400	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.37579.2.S1_at	BJ267869	-	-	1e+0	At2g25570	binding	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1610448_at	CF212667	-	-	7e-1	At5g06690	WCRKC1 (WCRKC THIOREDOXIN 1)	C.G.	S.X.	Please select
0.02	6e+0	30	Zea mays	Zm.2741.1.A1_at	CB603857	-	-	2e+0	At4g13140	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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