CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HW04N20u_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 94.8 HW04N20u_at HW04N20u - - 2e-1 At3g58230 unknown protein S.X. H.G.
0.78 91.2 Contig15913_at Contig15913 - - 5e-3 At2g17760 aspartyl protease family protein S.X. H.G.
0.67 84.7 Contig17015_at Contig17015 - - 7e+0 At4g10465 metal ion binding S.X. H.G.
0.65 81.4 Contig9002_at Contig9002 - - 7e-20 At1g54590 splicing factor Prp18 family protein S.X. H.G.
0.55 72.0 Contig6845_at Contig6845 - - 2e+0 At4g33350 chloroplast inner membrane import protein Tic22, putative S.X. H.G.
0.53 69.7 Contig10417_at Contig10417 - - 2e-16 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) S.X. H.G.
0.53 69.7 Contig20672_x_at Contig20672 - - 5e+0 At5g54430 universal stress protein (USP) family protein S.X. H.G.
0.47 62.2 Contig25029_at Contig25029 - - 4e+0 At3g48231 LCR48 (Low-molecular-weight cysteine-rich 48) S.X. H.G.
0.46 61.0 Contig25242_at Contig25242 - - 4e+0 At2g04530 CPZ S.X. H.G.
0.40 53.1 Contig22141_at Contig22141 - - 3e+0 At3g07440 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.3 99.6 GSM160822 38% SWC rep3 GSE6990 Barley drought stress
14.7 99.5 GSM160815 drought control rep3 GSE6990 Barley drought stress
14.0 99.5 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
12.8 99.4 GSM160464 drought control rep1 GSE6990 Barley drought stress
11.1 99.2 GSM261030 Dicktoo-control-rep1 GSE10329 Low temperature stress in cv. Dicktoo
11.0 99.2 GSM261032 Dicktoo control-rep3 GSE10329 Low temperature stress in cv. Dicktoo
10.9 99.2 GSM261041 Dicktoo-deacclimation-rep3 GSE10329 Low temperature stress in cv. Dicktoo
10.7 99.2 GSM261039 Dicktoo-deacclimation-rep1 GSE10329 Low temperature stress in cv. Dicktoo
10.6 99.2 GSM261040 Dicktoo-deacclimation-rep2 GSE10329 Low temperature stress in cv. Dicktoo
10.5 99.2 GSM261034 Dicktoo-chilling-rep2 GSE10329 Low temperature stress in cv. Dicktoo
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 1e-41 169 Contig19357_at Contig19357 - - 2e+0 At3g14840 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.02 1e-1 36 Contig24472_at Contig24472 - - 2e+0 At3g17170 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) C.G. S.X.
0.02 4e-1 34 Contig330_at Contig330 - - 7e-4 At5g41600 BTI3 (VIRB2-INTERACTING PROTEIN 3) C.G. S.X.
0.01 2e+0 32 Contig5932_at Contig5932 - - 6e-15 At1g25350 OVA9 (ovule abortion 9) C.G. S.X.
0.02 2e+0 32 Contig17196_at Contig17196 - - 2e-4 At5g06180 - C.G. S.X.
0.02 2e+0 32 Contig16812_at Contig16812 - - 3e+0 At4g23770 unknown protein C.G. S.X.
0.01 2e+0 32 Contig12480_at Contig12480 - - 9e-7 At1g30680 toprim domain-containing protein C.G. S.X.
0.04 2e+0 32 Contig10749_at Contig10749 - - 5e+0 At2g47130 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 7e+0 30 HVSMEa0003B04r2_s_at HVSMEa0003B04r2 - - 3e+0 At4g35260 IDH1 (ISOCITRATE DEHYDROGENASE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 Arabidopsis thaliana At3g58230 824992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.05 1e+0 34 Glycine max GmaAffx.41862.1.S1_at BM523478 - - 5e-1 At4g34990 AtMYB32 (myb domain protein 32) C.G. S.X.
0.12 1e-19 97 Oryza sativa Os05g0440800 AK073901.1 - Protein kinase domain containing protein 5e-53 At3g44200 NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6") C.G. S.X.
0.03 3e-1 36 Populus trichocarpa PtpAffx.202516.1.S1_at pmrna5036 hypothetical protein - 2e-6 At2g31690 lipase class 3 family protein C.G. S.X.
0.57 5e-141 500 Triticum aestivum Ta.18537.1.S1_at CA638492 - - 1e-1 At3g20180 metal ion binding C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1616376_at CB979053 hypothetical protein LOC100243811 - 8e-1 At4g09110 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.19 1e-28 125 Zea mays Zm.6845.1.A1_at BG841671 - - 7e-1 At5g63150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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