CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HV_CEb0017F03r2_s_at

Gene name light-harvesting complex I

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 HV_CEb0017F03r2_s_at HV_CEb0017F03r2 light-harvesting complex I - 2e-11 At3g54890 LHCA1 S.X. H.G.
0.80 92.5 Contig10917_at Contig10917 - - 5e-2 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) S.X. H.G.
0.44 58.9 Contig12109_at Contig12109 - - 2e-16 At3g05760 nucleic acid binding / zinc ion binding S.X. H.G.
0.36 47.1 Contig7964_at Contig7964 - - 4e-2 At1g19140 - S.X. H.G.
0.31 38.6 Contig2999_at Contig2999 - - 6e-7 At5g09220 AAP2 (AMINO ACID PERMEASE 2) S.X. H.G.
0.27 32.1 Contig16787_at Contig16787 - - 2e+0 At3g11320 organic anion transmembrane transporter S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.7 99.3 GSM261052 Bonus Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.8 98.9 GSM261050 Bonus Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.7 98.6 GSM261058 Xantha b-12 Cotrol rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2 98.5 GSM372958 genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1 98.4 GSM372974 genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.9 98.3 GSM261051 Bonus Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.5 98.2 GSM372940 genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.4 98.1 GSM372939 genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8 97.8 GSM372938 genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3 97.4 GSM68892 3 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.57 0 660 Contig1208_s_at Contig1208 - - 7e-22 At3g54890 LHCA1 C.G. S.X.
0.36 3e-48 190 HV14N20u_x_at HV14N20u - - 1e-8 At3g54890 LHCA1 C.G. S.X.
0.36 3e-48 190 HV14N20u_at HV14N20u - - 1e-8 At3g54890 LHCA1 C.G. S.X.
0.38 2e-34 145 HVSMEh0080L10r2_x_at HVSMEh0080L10r2 - - 6e-11 At3g54890 LHCA1 C.G. S.X.
0.04 2e-9 61 Contig1815_at Contig1815 - - 1e-11 At1g61520 LHCA3 C.G. S.X.
0.06 3e-5 48 Contig168_at Contig168 - - 9e-14 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) C.G. S.X.
0.04 3e-5 48 Contig820_at Contig820 - - 4e-24 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) C.G. S.X.
0.04 3e-5 48 Contig422_at Contig422 - - 8e-25 At1g29930 CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1) C.G. S.X.
0.07 1e-4 46 HA10A12u_x_at HA10A12u - - 4e-27 At2g34420 LHB1B2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 2e-11 69 Arabidopsis thaliana At3g54890 824654 LHCA1 Encodes a component of the light harvesting complex associated with photosystem I. - - - C.G. S.X.
0.07 3e-4 46 Glycine max Gma.10947.1.S1_at BE657551 - - 2e-62 At3g54890 LHCA1 C.G. S.X.
0.27 9e-98 357 Oryza sativa Os01g0124000 AK060800.1 - Bowman Birk trypsin inhibitor 4e-9 At3g54890 LHCA1 C.G. S.X.
0.14 2e-5 50 Populus trichocarpa Ptp.5232.1.S1_at CF936634 light-harvesting complex I protein Lhca1 - 4e-48 At3g54890 LHCA1 C.G. S.X.
0.67 8e-137 486 Triticum aestivum Ta.2402.3.S1_x_at CK216367 - - 5e-22 At3g54890 LHCA1 C.G. S.X.
0.19 6e-30 129 Vitis vinifera 1619903_at CD720479 hypothetical protein LOC100263275 - 8e-71 At3g54890 LHCA1 C.G. S.X.
0.37 6e-111 398 Zea mays Zm.14486.1.A1_at AI964508 chlorophyll a-b binding protein 6A - 6e-7 At3g54890 LHCA1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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