Gene omics information

Query gene ID HV_CEb0017F03r2_s_at
Gene name light-harvesting complex I
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8394.0HV_CEb0017F03r2_s_atHV_CEb0017F03r2light-harvesting complex I-2e-11At3g54890LHCA1S.X.H.G.
0.8092.5Contig10917_atContig10917--5e-2At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)S.X.H.G.
0.4458.9Contig12109_atContig12109--2e-16At3g05760nucleic acid binding / zinc ion bindingS.X.H.G.
0.3647.1Contig7964_atContig7964--4e-2At1g19140-S.X.H.G.
0.3138.6Contig2999_atContig2999--6e-7At5g09220AAP2 (AMINO ACID PERMEASE 2)S.X.H.G.
0.2732.1Contig16787_atContig16787--2e+0At3g11320organic anion transmembrane transporterS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.799.3GSM261052Bonus Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.898.9GSM261050Bonus Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.798.6GSM261058Xantha b-12 Cotrol rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.298.5GSM372958genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.198.4GSM372974genotype: 11542 - pathogen isolates: 5874 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.998.3GSM261051Bonus Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.598.2GSM372940genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.498.1GSM372939genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.897.8GSM372938genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.397.4GSM688923 h salt stressed replicate 1GSE3097Barley1 salinity stress study
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.570660Contig1208_s_atContig1208--7e-22At3g54890LHCA1C.G.S.X.
0.363e-48190HV14N20u_x_atHV14N20u--1e-8At3g54890LHCA1C.G.S.X.
0.363e-48190HV14N20u_atHV14N20u--1e-8At3g54890LHCA1C.G.S.X.
0.382e-34145HVSMEh0080L10r2_x_atHVSMEh0080L10r2--6e-11At3g54890LHCA1C.G.S.X.
0.042e-961Contig1815_atContig1815--1e-11At1g61520LHCA3C.G.S.X.
0.063e-548Contig168_atContig168--9e-14At4g10340LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)C.G.S.X.
0.043e-548Contig820_atContig820--4e-24At4g10340LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)C.G.S.X.
0.043e-548Contig422_atContig422--8e-25At1g29930CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)C.G.S.X.
0.071e-446HA10A12u_x_atHA10A12u--4e-27At2g34420LHB1B2C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.362e-1169Arabidopsis thalianaAt3g54890824654LHCA1Encodes a component of the light harvesting complex associated with photosystem I.---C.G.S.X.
0.073e-446Glycine maxGma.10947.1.S1_atBE657551--2e-62At3g54890LHCA1C.G.S.X.
0.279e-98357Oryza sativaOs01g0124000AK060800.1-Bowman Birk trypsin inhibitor4e-9At3g54890LHCA1C.G.S.X.
0.142e-550Populus trichocarpaPtp.5232.1.S1_atCF936634light-harvesting complex I protein Lhca1-4e-48At3g54890LHCA1C.G.S.X.
0.678e-137486Triticum aestivumTa.2402.3.S1_x_atCK216367--5e-22At3g54890LHCA1C.G.S.X.
0.196e-30129Vitis vinifera1619903_atCD720479hypothetical protein LOC100263275-8e-71At3g54890LHCA1C.G.S.X.
0.376e-111398Zea maysZm.14486.1.A1_atAI964508chlorophyll a-b binding protein 6A-6e-7At3g54890LHCA1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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