Gene omics information

Query gene ID	HV_CEa0012H15r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HV_CEa0012H15r2_at	HV_CEa0012H15r2	-	-	4e+0	At1g11450	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.91	98.1	Contig15145_at	Contig15145	-	-	1e-61	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	S.X.	H.G.	Please select
0.91	98.1	Contig9426_at	Contig9426	-	-	2e-2	At5g51340	unknown protein	S.X.	H.G.	Please select
0.91	98.1	Contig21454_x_at	Contig21454	-	-	4e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	S.X.	H.G.	Please select
0.83	94.0	Contig23898_at	Contig23898	-	-	4e-1	At2g01610	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.57	74.9	Contig21304_s_at	Contig21304	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.7	99.4	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.9	99.2	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
9.1	98.9	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.8	98.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.6	98.8	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.3	98.1	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
6.2	98.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	5e-7	54	HVSMEn0017M01r2_at	HVSMEn0017M01r2	-	-	9e-1	At2g40100	LHCB4.3 (light harvesting complex PSII)	C.G.	S.X.	Please select
0.02	3e-2	38	Contig4288_at	Contig4288	-	-	2e-1	At5g24400	emb2024 (embryo defective 2024)	C.G.	S.X.	Please select
0.04	5e-1	34	Contig19793_at	Contig19793	-	-	6e-2	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select
0.01	5e-1	34	Contig10102_at	Contig10102	-	-	9e-1	At5g08130	BIM1	C.G.	S.X.	Please select
0.03	2e+0	32	Contig7785_at	Contig7785	-	-	3e-14	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10393_at	Contig10393	-	-	2e-3	At1g47720	OSB1 (Organellar Single-stranded)	C.G.	S.X.	Please select
0.04	2e+0	32	HVSMEc0004B17f_x_at	HVSMEc0004B17f	-	-	1e+1	At5g36960	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig16582_at	Contig16582	-	-	9e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Contig15998_at	Contig15998	-	-	4e-1	At1g58380	XW6	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At1g11450	837687	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-2	38	Glycine max	Gma.5343.1.S1_at	BM092463	-	-	6e-1	At2g04034	-	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	OsAffx.30910.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.221940.1.S1_at	pmrna39062	hypothetical protein	-	2e-6	At5g66050	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.110234.1.S1_at	CA661581	-	-	1e+1	At5g64630	FAS2 (FASCIATA 2)	C.G.	S.X.	Please select
0.04	5e+0	30	Vitis vinifera	1615335_s_at	CF205989.1	hypothetical protein LOC100241327	-	2e+0	At4g15760	MO1 (MONOOXYGENASE 1)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.17674.1.S1_at	CK369783	-	-	2e+0	At1g08280	glycosyl transferase family 29 protein / sialyltransferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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