Gene omics information

Query gene ID	HV_CEa0011G08r2_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	HV_CEa0011G08r2_x_at	HV_CEa0011G08r2	-	-	1e+0	At3g25265	LCR4 (Low-molecular-weight cysteine-rich 4)	S.X.	H.G.	Please select
0.08	6.5	HVSMEa0003D12r2_at	HVSMEa0003D12r2	-	-	3e+0	At4g00335	RHB1A	S.X.	H.G.	Please select
0.07	5.8	HO07N21S_at	HO07N21S	-	-	9e-1	At3g28917	MIF2 (MINI ZINC FINGER 2)	S.X.	H.G.	Please select
0.07	5.8	Contig13509_at	Contig13509	-	-	5e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	S.X.	H.G.	Please select
0.02	1.8	Contig23437_at	Contig23437	-	-	2e+0	At5g66870	ASL1	S.X.	H.G.	Please select
0.02	1.8	Contig23856_at	Contig23856	-	-	1e+0	At1g67590	remorin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
73.4	100.0	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
21.6	99.8	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
11.5	99.3	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.8	99.2	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.7	99.2	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.2	99.1	GSM130801	salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
10.1	99.1	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.0	99.1	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.7	98.9	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
8.3	98.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	2e-41	167	Contig13257_at	Contig13257	-	-	8e-3	At4g16710	glycosyltransferase family protein 28	C.G.	S.X.	Please select
0.01	1e-1	34	Contig5413_at	Contig5413	-	-	4e-34	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.03	1e-1	34	Contig12445_at	Contig12445	-	-	5e-1	At4g17486	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	32	Contig12551_at	Contig12551	-	-	5e-1	At2g24590	splicing factor, putative	C.G.	S.X.	Please select
0.05	6e-1	32	Contig3101_at	Contig3101	-	-	1e-3	At5g54750	transport protein particle (TRAPP) component Bet3, putative	C.G.	S.X.	Please select
0.05	6e-1	32	Contig3101_s_at	Contig3101	-	-	1e-3	At5g54750	transport protein particle (TRAPP) component Bet3, putative	C.G.	S.X.	Please select
0.04	2e+0	30	Contig12812_s_at	Contig12812	-	-	4e+0	At4g09440	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	30	Contig10547_at	Contig10547	-	-	6e-1	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	2e+0	30	Contig9523_at	Contig9523	-	-	8e+0	At5g65000	nucleotide-sugar transporter family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e+0	32	Arabidopsis thaliana	At3g25265	3768928	LCR4 (Low-molecular-weight cysteine-rich 4)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e+0	32	Glycine max	GmaAffx.20356.1.A1_at	CD399441	-	-	7e-1	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	C.G.	S.X.	Please select
0.04	9e+0	30	Oryza sativa	OsAffx.17878.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-1	36	Populus trichocarpa	Ptp.5793.1.S1_s_at	BP929020	hypothetical protein	-	1e-3	At1g70700	TIFY7	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	5e+0	30	Triticum aestivum	TaAffx.26742.1.S1_at	CA685502	-	-	2e+0	At4g38100	unknown protein	C.G.	S.X.	Please select
0.06	9e-2	34	Vitis vinifera	1617086_at	CF513777	-	-	4e+0	At5g66490	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	30	Zea mays	Zm.15135.1.A1_at	BM079844	-	-	1e+0	At2g22510	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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