Gene omics information

Query gene ID	HVSMEn0022J09r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	HVSMEn0022J09r2_at	HVSMEn0022J09r2	-	-	2e-1	At3g55070	-	S.X.	H.G.	Please select
0.83	94.0	baak2o06_x_at	baak2o06	-	-	3e+0	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	S.X.	H.G.	Please select
0.67	84.7	HV_CEa0013M08r2_at	HV_CEa0013M08r2	-	-	2e+0	At5g38020	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	S.X.	H.G.	Please select
0.47	62.2	rbah53j14_at	rbah53j14	-	-	4e-2	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	S.X.	H.G.	Please select
0.35	45.1	Contig9655_s_at	Contig9655	-	-	4e+0	At4g22520	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.32	40.3	Contig9343_at	Contig9343	-	-	9e-5	At2g22670	IAA8	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.1	99.9	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
31.5	99.9	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
27.5	99.8	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
27.0	99.8	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
21.7	99.8	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
20.0	99.7	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
18.0	99.7	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.5	99.2	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.6	99.0	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.8	98.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	Contig15042_at	Contig15042	-	-	7e-3	At2g27760	ATIPT2 (TRNA ISOPENTENYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig3173_s_at	Contig3173	-	-	6e+0	At4g05091	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig11037_at	Contig11037	-	-	7e+0	At5g23908	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig16567_at	Contig16567	-	-	7e-3	At5g42260	BGLU12 (BETA GLUCOSIDASE 12)	C.G.	S.X.	Please select
0.04	1e+0	32	HV14K04u_s_at	HV14K04u	-	-	3e-1	At2g39975	-	C.G.	S.X.	Please select
0.02	1e+0	32	Contig10202_at	Contig10202	-	-	1e-14	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	C.G.	S.X.	Please select
0.01	1e+0	32	Contig4573_at	Contig4573	-	-	6e-33	At5g50950	fumarate hydratase, putative / fumarase, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Contig3175_at	Contig3175	-	-	2e-3	At1g34750	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	1e+0	32	Contig3173_at	Contig3173	-	-	6e+0	At4g05091	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At3g55070	824673	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	9e-1	34	Glycine max	Gma.13469.2.A1_at	CD417367	-	-	3e+0	At5g15840	CO (CONSTANS)	C.G.	S.X.	Please select
0.06	5e-3	42	Oryza sativa	Os11g0175700	AB071804.1	-	The start codon is not identified.	6e-8	At1g35560	TCP family transcription factor, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-1	34	Populus trichocarpa	PtpAffx.69709.1.A1_at	CV245971	hypothetical protein	-	7e-2	At1g49530	GGPS6 (geranylgeranyl pyrophosphate synthase 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e-1	34	Triticum aestivum	TaAffx.86257.1.S1_at	CA612751	-	-	1e-2	At3g01730	unknown protein	C.G.	S.X.	Please select
0.04	7e-1	32	Vitis vinifera	1614587_at	CB972337	-	-	1e+0	At5g15860	ATPCME (PRENYLCYSTEINE METHYLESTERASE)	C.G.	S.X.	Please select
0.03	4e+0	30	Zea mays	Zm.13249.2.S1_at	CF012746	-	-	1e+0	At1g35255	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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