Gene omics information

Query gene ID	HVSMEn0020I19r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	HVSMEn0020I19r2_at	HVSMEn0020I19r2	-	-	2e+0	At1g72290	trypsin and protease inhibitor family protein / Kunitz family protein	S.X.	H.G.	Please select
0.53	69.7	Contig26424_at	Contig26424	-	-	4e+0	At5g13240	transcription regulator	S.X.	H.G.	Please select
0.50	66.9	Contig26400_at	Contig26400	-	-	2e-5	At5g63040	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig10250_at	Contig10250	-	-	2e-5	At1g04950	TAF6 (TBP-ASSOCIATED FACTOR 6)	S.X.	H.G.	Please select
0.33	42.6	HVSMEh0086G04r2_at	HVSMEh0086G04r2	-	-	3e+0	At4g03280	PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)	S.X.	H.G.	Please select
0.31	38.6	Contig18085_at	Contig18085	-	-	4e-11	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.1	99.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
19.2	99.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.3	99.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
6.2	98.0	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
5.6	97.7	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
5.3	97.4	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	7e-2	36	Contig18705_at	Contig18705	-	-	4e+0	At2g01640	unknown protein	C.G.	S.X.	Please select
0.05	3e-1	34	HO04B16S_at	HO04B16S	-	-	3e+0	At5g11990	proline-rich family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Contig2083_s_at	Contig2083	photosystem-I PSI-F subunit precursor	-	6e-7	At1g31330	PSAF (photosystem I subunit F)	C.G.	S.X.	Please select
0.03	3e-1	34	Contig2177_at	Contig2177	-	-	6e-10	At4g12800	PSAL (photosystem I subunit L)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig13048_at	Contig13048	-	-	5e+0	At1g08380	PSAO (photosystem I subunit O)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig16099_at	Contig16099	-	-	8e+0	At5g28800	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig10514_at	Contig10514	-	-	1e-2	At5g67360	ARA12	C.G.	S.X.	Please select
0.02	1e+0	32	Contig9724_at	Contig9724	voltage-dependent outwardly rectifying plasma membrane K+ channel KCO1/TPK1	-	3e-3	At5g55630	ATKCO1	C.G.	S.X.	Please select
0.02	1e+0	32	Contig8017_at	Contig8017	-	-	7e-1	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At1g72290	843561	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	8e-1	34	Glycine max	GmaAffx.64811.1.S1_at	BM891283	-	-	3e+0	At4g37685	unknown protein	C.G.	S.X.	Please select
0.11	3e-10	65	Oryza sativa	OsAffx.14722.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.220676.1.S1_at	pmrna37086	hypothetical protein	-	2e+1	At4g33100	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e-1	34	Triticum aestivum	Ta.6416.2.S1_a_at	CA611148	-	-	1e+0	At2g31230	ATERF15 (Ethylene-responsive element binding factor 15)	C.G.	S.X.	Please select
0.06	2e-1	34	Vitis vinifera	1617028_at	AY037922.1	-	-	7e+0	At5g35066	unknown protein	C.G.	S.X.	Please select
0.05	9e-1	32	Zea mays	ZmAffx.673.1.A1_at	AI691345	alpha-expansin 20	-	1e-2	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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