Gene omics information

Query gene ID	HVSMEn0017F07r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	HVSMEn0017F07r2_at	HVSMEn0017F07r2	-	-	3e-7	At1g78560	bile acid:sodium symporter family protein	S.X.	H.G.	Please select
0.55	72.0	HB25K17r_at	HB25K17r	-	-	2e+0	At4g09260	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig12570_at	Contig12570	-	-	5e-29	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	S.X.	H.G.	Please select
0.44	58.9	Contig16785_at	Contig16785	-	-	1e+0	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	S.X.	H.G.	Please select
0.33	42.6	Contig18921_at	Contig18921	-	-	1e+0	At1g49520	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.20	21.1	Contig8334_at	Contig8334	-	-	1e+0	At1g29810	dehydratase family	S.X.	H.G.	Please select
0.12	10.4	Contig7564_at	Contig7564	-	-	4e-5	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	99.4	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.2	99.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.2	99.4	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.1	99.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.1	99.3	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.4	99.3	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.3	99.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.5	99.2	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.4	99.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	4e-85	313	HT12B01u_x_at	HT12B01u	-	-	7e+0	At2g22430	ATHB6	C.G.	S.X.	Please select
0.03	5e-1	34	Contig23168_at	Contig23168	-	-	4e-3	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	C.G.	S.X.	Please select
0.04	5e-1	34	Contig491_s_at	Contig491	-	-	2e-11	At4g33010	AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)	C.G.	S.X.	Please select
0.01	5e-1	34	Contig1483_at	Contig1483	-	-	3e-156	At4g33010	AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig15001_at	Contig15001	-	-	3e-2	At2g34460	flavin reductase-related	C.G.	S.X.	Please select
0.02	2e+0	32	Contig14136_at	Contig14136	-	-	7e-15	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10924_at	Contig10924	-	-	5e-1	At4g28030	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig6225_at	Contig6225	-	-	2e-17	At4g11740	SAY1	C.G.	S.X.	Please select
0.02	9e+0	30	Contig3747_s_at	Contig3747	-	-	2e+0	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-7	56	Arabidopsis thaliana	At1g78560	844192	bile acid:sodium symporter family protein	F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, membrane;OBMPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	HgAffx.6313.1.A1_at	CK350566	-	-	5e+0	At5g51105	unknown protein	C.G.	S.X.	Please select
0.26	3e-58	226	Oryza sativa	Os04g0381100	AK121764.1	-	Bile acid:sodium symporter family protein	1e-18	At1g78560	bile acid:sodium symporter family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	4e-4	46	Populus trichocarpa	PtpAffx.16548.2.A1_a_at	DN489341	bile acid:Na+ symporter family protein	-	9e-33	At1g78560	bile acid:sodium symporter family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	8e-45	180	Triticum aestivum	Ta.4790.1.S1_at	BJ271696	-	-	8e+0	At4g00210	LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1609108_at	CF414573	hypothetical protein LOC100255008	-	4e+0	At5g02680	ATP binding / aminoacyl-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.189.1.A1_at	AI665653	-	-	8e-1	At1g12650	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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