CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HVSMEn0012P04f2_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.94 98.9 HVSMEn0012P04f2_at HVSMEn0012P04f2 - - 2e-1 At3g63030 MBD4 S.X. H.G.
0.68 85.1 HF22K12r_at HF22K12r - - 5e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein S.X. H.G.
0.63 80.3 HB25J22r_x_at HB25J22r - - 9e+0 At5g04790 unknown protein S.X. H.G.
0.52 68.3 Contig13375_at Contig13375 - - 3e-1 At5g55750 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.51 67.5 Contig7312_s_at Contig7312 - - 7e-2 At2g32650 - S.X. H.G.
0.50 66.9 Contig21007_at Contig21007 - - 1e+0 At2g27520 F-box family protein S.X. H.G.
0.46 61.0 Contig3371_at Contig3371 - - 6e-7 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) S.X. H.G.
0.42 55.2 Contig4155_at Contig4155 - - 2e-38 At5g54310 AGD5 (ARF-GAP domain 5) S.X. H.G.
0.40 53.1 Contig14781_at Contig14781 - - 1e+0 At5g18970 AWPM-19-like membrane family protein S.X. H.G.
0.38 49.5 Contig10576_at Contig10576 - - 1e-21 At4g33080 protein kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.0 99.5 GSM261027 ABA-Late-rep1 GSE10328 ABA experiment
12.1 99.3 GSM261051 Bonus Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.7 99.3 GSM261028 ABA-Late-rep2 GSE10328 ABA experiment
11.0 99.2 GSM68890 3 h control replicate 2 GSE3097 Barley1 salinity stress study
10.2 99.1 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
9.1 98.9 GSM68904 27 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study
8.7 98.9 GSM68889 3 h control replicate 1 GSE3097 Barley1 salinity stress study
7.9 98.7 GSM398261 HS41-1_0d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.8 98.6 GSM160464 drought control rep1 GSE6990 Barley drought stress
7.5 98.6 GSM261024 ABA-Early-rep1 GSE10328 ABA experiment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 38 Contig3907_at Contig3907 - - 6e-10 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) C.G. S.X.
0.05 2e-2 38 HC108A06_SK_at HC108A06_SK - - 8e-1 At5g58280 transcriptional factor B3 family protein C.G. S.X.
0.03 2e-2 38 Contig3906_s_at Contig3906 - - 1e-7 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) C.G. S.X.
0.04 8e-2 36 Contig1916_s_at Contig1916 - - 2e-2 At1g44575 NPQ4 (NONPHOTOCHEMICAL QUENCHING) C.G. S.X.
0.03 8e-2 36 Contig7490_at Contig7490 - - 2e-17 At4g28480 DNAJ heat shock family protein C.G. S.X.
0.00 8e-2 36 Contig21662_at Contig21662 - - 1e+0 At5g11160 APT5 (Adenine phosphoribosyltransferase 5) C.G. S.X.
0.04 8e-2 36 HO10M16S_at HO10M16S - - 7e-5 At5g28630 glycine-rich protein C.G. S.X.
0.02 3e-1 34 Contig20125_at Contig20125 - - 3e+0 At3g05540 - C.G. S.X.
0.03 3e-1 34 Contig21092_at Contig21092 - - 2e+0 At3g27350 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 36 Arabidopsis thaliana At3g63030 825478 MBD4 Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. - - - C.G. S.X.
0.06 6e-2 38 Glycine max GmaAffx.55766.1.S1_x_at BQ079492 - - 8e-1 At3g48420 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.20 1e-19 97 Oryza sativa Os05g0427900 AK067448.1 - Heat shock protein DnaJ family protein 4e-1 At4g39410 WRKY13 C.G. S.X.
0.04 2e-1 36 Populus trichocarpa PtpAffx.217331.1.S1_at pmrna32547 hypothetical protein - 1e+0 At1g05290 transcription factor C.G. S.X.
0.44 8e-90 329 Triticum aestivum TaAffx.36790.1.S1_at CA633206 - - 2e+1 At3g30260 AGL79 (AGAMOUS-LIKE 79) C.G. S.X.
0.05 5e-2 36 Vitis vinifera 1607408_at CF216013 - - 2e-1 At1g10720 BSD domain-containing protein C.G. S.X.
0.04 3e-1 34 Zea mays Zm.3389.1.S1_at BI430595 hypothetical protein LOC100275296 - 2e-5 At5g20165 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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