Gene omics information

Query gene ID	HVSMEn0001D07r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HVSMEn0001D07r2_at	HVSMEn0001D07r2	-	-	6e-1	At2g25260	unknown protein	S.X.	H.G.	Please select
0.67	84.7	HT07M11u_at	HT07M11u	-	-	6e+0	At4g17870	-	S.X.	H.G.	Please select
0.67	84.7	HVSMEg0005C14r2_at	HVSMEg0005C14r2	-	-	1e+1	At4g19770	glycosyl hydrolase family 18 protein	S.X.	H.G.	Please select
0.11	9.4	HC113E08_SK_at	HC113E08_SK	-	-	7e-2	At5g50490	NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5)	S.X.	H.G.	Please select
0.09	7.4	HU08C09u_at	HU08C09u	-	-	8e-1	At3g30260	AGL79 (AGAMOUS-LIKE 79)	S.X.	H.G.	Please select
0.08	6.5	Contig24913_at	Contig24913	-	-	1e+0	At1g32370	TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.1	99.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
23.8	99.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
18.2	99.7	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
18.1	99.7	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
16.6	99.6	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
15.1	99.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.9	99.3	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.3	99.1	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
9.3	99.0	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.2	99.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	7e-135	478	Contig5377_at	Contig5377	-	-	8e-1	At4g36250	ALDH3F1 (Aldehyde Dehydrogenase 3F1)	C.G.	S.X.	Please select
0.34	1e-93	341	Contig16434_at	Contig16434	-	-	6e-1	At4g01040	glycosyl hydrolase family 18 protein	C.G.	S.X.	Please select
0.46	4e-87	319	Contig13191_s_at	Contig13191	-	-	6e+0	At5g50200	WR3 (WOUND-RESPONSIVE 3)	C.G.	S.X.	Please select
0.46	4e-87	319	Contig13191_at	Contig13191	-	-	6e+0	At5g50200	WR3 (WOUND-RESPONSIVE 3)	C.G.	S.X.	Please select
0.76	2e-79	293	HVSMEa0013J12r2_x_at	HVSMEa0013J12r2	-	-	9e+0	At5g63063	-	C.G.	S.X.	Please select
0.57	2e-79	293	Contig21257_s_at	Contig21257	-	-	1e+0	At5g67520	adenylylsulfate kinase, putative	C.G.	S.X.	Please select
0.55	5e-77	286	EBro03_SQ006_P24_at	EBro03_SQ006_P24	-	-	1e+0	At5g67520	adenylylsulfate kinase, putative	C.G.	S.X.	Please select
0.50	2e-73	274	Contig18776_at	Contig18776	-	-	5e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.72	4e-47	186	HW02L01u_at	HW02L01u	-	-	6e-1	At4g09250	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Arabidopsis thaliana	At2g25260	817064	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e+0	32	Glycine max	Gma.8381.2.S1_at	BQ742351	-	-	1e-2	At4g29850	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	Oryza sativa	OsAffx.25732.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	36	Populus trichocarpa	Ptp.1489.2.S1_s_at	CF229570	hypothetical protein	-	2e-2	At3g60080	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	3e-3	42	Triticum aestivum	Ta.15960.1.S1_at	CA502466	-	-	1e+0	At2g01340	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1617968_at	CB345331	-	-	1e+0	At3g05600	epoxide hydrolase, putative	C.G.	S.X.	Please select
0.04	2e+1	28	Zea mays	ZmAffx.1461.1.S1_at	11990232-28	ATP synthase epsilon chain	-	3e-65	Atcg00470	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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