Gene omics information

Query gene ID	HVSMEm0005N22r2_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.98	100.0	HVSMEm0005N22r2_s_at	HVSMEm0005N22r2	-	-	4e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	S.X.	H.G.	Please select
0.55	72.0	HA28N15r_x_at	HA28N15r	-	-	3e-22	At5g59690	histone H4	S.X.	H.G.	Please select
0.46	61.0	Contig21216_at	Contig21216	-	-	2e+0	At3g12760	-	S.X.	H.G.	Please select
0.45	59.3	HVSMEl0006A12r2_at	HVSMEl0006A12r2	-	-	2e+0	At5g57450	XRCC3	S.X.	H.G.	Please select
0.44	58.9	Contig21310_at	Contig21310	-	-	1e-1	At5g24250	unknown protein	S.X.	H.G.	Please select
0.43	56.4	Contig25726_at	Contig25726	-	-	8e-2	At1g51940	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein	S.X.	H.G.	Please select
0.41	53.9	HI09P06r_at	HI09P06r	-	-	8e+0	Atcg00720	-	S.X.	H.G.	Please select
0.39	50.5	HVSMEi0010I05r2_x_at	HVSMEi0010I05r2	-	-	3e+0	At3g53500	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.39	50.5	HVSMEn0001D07r2_at	HVSMEn0001D07r2	-	-	6e-1	At2g25260	unknown protein	S.X.	H.G.	Please select
0.37	47.9	HS06I24u_at	HS06I24u	-	-	7e-5	At4g18570	proline-rich family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.3	99.6	GSM372959	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.9	99.5	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.6	99.2	GSM372941	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.4	99.2	GSM372960	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.4	99.0	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.2	99.0	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.4	98.8	GSM372943	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.7	98.6	GSM372961	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.6	98.6	GSM372958	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.4	98.5	GSM372940	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	0	690	HVSMEm0003M13r2_at	HVSMEm0003M13r2	-	-	5e+0	Atmg01010	-	C.G.	S.X.	Please select
0.03	2e+0	32	Contig17532_at	Contig17532	-	-	3e-1	At1g09415	NIMIN-3 (NIM1-INTERACTING 3)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12902_at	Contig12902	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	C.G.	S.X.	Please select
0.01	2e+0	32	Contig13144_at	Contig13144	-	-	8e-23	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8213_at	Contig8213	-	-	9e+0	At5g44060	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig3847_at	Contig3847	-	-	4e-9	At3g26935	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.01	8e+0	30	Contig12871_at	Contig12871	-	-	1e-9	At3g58630	transcription factor	C.G.	S.X.	Please select
0.01	8e+0	30	Contig7598_at	Contig7598	-	-	4e+0	At5g21020	-	C.G.	S.X.	Please select
0.02	8e+0	30	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At1g70895	843428	CLE17 (CLAVATA3/ESR-RELATED 17)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	GmaAffx.83107.1.S1_at	BQ296672	-	-	2e-1	At2g04380	unknown protein	C.G.	S.X.	Please select
0.32	5e-41	169	Oryza sativa	Os08g0425200	AK099569.1	-	Conserved hypothetical protein	1e-1	At4g11870	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	Ptp.1151.2.A1_at	CV283127	hypothetical protein	-	1e+1	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	1e-101	369	Triticum aestivum	TaAffx.8444.1.S1_at	BG904574	-	-	2e-5	At4g04330	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1615863_at	CB971724	hypothetical protein LOC100241130	-	2e-1	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.6093.1.A1_a_at	BM347439	hypothetical protein LOC100272685 /// translocon-associated protein beta containing protein	-	9e-6	At5g14030	translocon-associated protein beta (TRAPB) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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