Gene omics information

Query gene ID	HVSMEm0003G18r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	98.7	HVSMEm0003G18r2_at	HVSMEm0003G18r2	-	-	9e-1	At1g09665	Toll-Interleukin-Resistance (TIR) domain-containing protein	S.X.	H.G.	Please select
0.42	55.2	Contig18768_at	Contig18768	-	-	4e-4	At2g41450	N-acetyltransferase	S.X.	H.G.	Please select
0.42	55.2	Contig20263_at	Contig20263	-	-	9e-2	At4g27600	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.37	47.9	Contig4628_at	Contig4628	-	-	3e-8	At2g41790	peptidase M16 family protein / insulinase family protein	S.X.	H.G.	Please select
0.36	47.1	Contig15531_at	Contig15531	-	-	6e+0	At4g36850	-	S.X.	H.G.	Please select
0.33	42.6	Contig7903_at	Contig7903	-	-	2e-11	At3g12280	RBR1 (RETINOBLASTOMA-RELATED 1)	S.X.	H.G.	Please select
0.33	42.6	Contig9754_at	Contig9754	-	-	5e+0	At5g18310	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig15655_at	Contig15655	-	-	2e+0	At1g08180	unknown protein	S.X.	H.G.	Please select
0.32	40.3	Contig5788_at	Contig5788	UDP-D-xylose epimerase 1	-	3e-6	At4g20460	NAD-dependent epimerase/dehydratase family protein	S.X.	H.G.	Please select
0.30	37.0	rbags11l14_s_at	rbags11l14	-	-	3e-1	At3g49040	F-box family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
65.8	100.0	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
46.8	99.9	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
46.1	99.9	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
28.1	99.8	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
25.6	99.8	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
17.7	99.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.1	99.4	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
11.2	99.2	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
7.1	98.4	GSM130801	salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
5.6	97.7	GSM68896	8 h control replicate 2	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	934	HVSMEm0003G18r2_s_at	HVSMEm0003G18r2	-	-	9e-1	At1g09665	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please select
0.32	0	775	Contig8055_at	Contig8055	-	-	7e-2	At5g10320	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig1760_s_at	Contig1760	-	-	2e-9	At1g09340	CRB (CHLOROPLAST RNA BINDING)	C.G.	S.X.	Please select
0.05	4e-1	34	HB11P03r_x_at	HB11P03r	-	-	8e+0	At5g42820	U2AF35B	C.G.	S.X.	Please select
0.05	4e-1	34	HB11P03r_at	HB11P03r	-	-	8e+0	At5g42820	U2AF35B	C.G.	S.X.	Please select
0.03	2e+0	32	Contig19031_at	Contig19031	-	-	9e-1	At1g60040	AGL49 (AGAMOUS-LIKE 49)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig7090_s_at	Contig7090	-	-	5e-40	At3g13470	chaperonin, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11863_at	Contig11863	-	-	4e-2	At2g40140	CZF1	C.G.	S.X.	Please select
0.01	2e+0	32	Contig2152_at	Contig2152	-	-	5e-6	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-1	34	Arabidopsis thaliana	At1g09665	837495	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	GmaAffx.88048.1.A1_at	BU549482	-	-	3e+0	At4g07786	unknown protein	C.G.	S.X.	Please select
0.05	8e-12	71	Oryza sativa	Os05g0497700	AK100622.1	-	Peptidase, trypsin-like serine and cysteineproteases domain containing protein	8e-5	At1g28320	DEG15	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.15454.1.S1_at	BU812420	-	-	1e-1	At1g11570	nuclear transport factor 2 (NTF2), putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	2e-60	232	Triticum aestivum	Ta.8333.1.S1_at	BQ161751	-	-	4e-2	At5g10320	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1622276_at	CF207704	-	-	4e+0	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.2525.1.A1_at	BM380204	germin-like protein subfamily 1 member 11	-	3e-2	At1g02335	GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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