Gene omics information

Query gene ID	HVSMEl0002I06r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HVSMEl0002I06r2_at	HVSMEl0002I06r2	-	-	1e+0	At2g19730	60S ribosomal protein L28 (RPL28A)	S.X.	H.G.	Please select
0.91	98.1	Contig25420_at	Contig25420	-	-	1e+0	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	S.X.	H.G.	Please select
0.83	94.0	HT07E09u_at	HT07E09u	-	-	1e+0	At1g49120	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.83	94.0	HY10H17u_at	HY10H17u	-	-	7e-1	At5g27740	EMB2775 (EMBRYO DEFECTIVE 2775)	S.X.	H.G.	Please select
0.77	90.8	HS06J15u_x_at	HS06J15u	-	-	1e+1	At5g26210	AL4 (ALFIN-LIKE 4)	S.X.	H.G.	Please select
0.71	87.1	Contig12879_at	Contig12879	-	-	1e-5	At4g20760	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
54.6	100.0	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
41.5	99.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
41.2	99.9	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
38.6	99.9	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
36.3	99.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
32.5	99.9	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
17.2	99.6	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
17.2	99.6	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
16.3	99.6	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
16.3	99.6	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-9	61	Contig19389_at	Contig19389	-	-	2e+0	At1g03710	-	C.G.	S.X.	Please select
0.03	6e-1	34	Contig7850_at	Contig7850	-	-	7e+0	At5g51845	-	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEg0001I10f_s_at	HVSMEg0001I10f	-	-	1e-2	At2g19730	60S ribosomal protein L28 (RPL28A)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig2048_at	Contig2048	-	-	5e-13	At2g19730	60S ribosomal protein L28 (RPL28A)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig20996_at	Contig20996	-	-	8e-3	At5g11910	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.04	2e+0	32	HU10G19u_x_at	HU10G19u	-	-	1e-1	At4g01150	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEc0002N01f2_s_at	HVSMEc0002N01f2	-	-	1e+1	At5g43245	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEc0002N01f2_at	HVSMEc0002N01f2	-	-	1e+1	At5g43245	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEk0016H18r2_at	HVSMEk0016H18r2	-	-	9e-1	At4g05553	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At2g19730	816492	60S ribosomal protein L28 (RPL28A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 6 components;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	32	Glycine max	PsAffx.CL1694Contig1_at	PsAffx.CL1694Contig1	-	-	9e-3	At5g03370	acylphosphatase family	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	OsAffx.32060.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.34279.1.A1_at	CV257008	hypothetical protein	-	3e+0	At5g24920	AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	5e-6	52	Triticum aestivum	TaAffx.86185.1.S1_at	CA614998	-	-	6e-2	At1g04778	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1618125_at	BQ798742	hypothetical protein LOC100261276	-	9e-23	At2g36580	pyruvate kinase, putative	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.900.1.A1_at	AI770893	-	-	1e+1	At5g19480	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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