Gene omics information

Query gene ID	HVSMEi0002I06r2_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	HVSMEi0002I06r2_x_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig13538_at	Contig13538	-	-	2e+0	At4g36430	peroxidase, putative	S.X.	H.G.	Please select
0.67	84.7	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	S.X.	H.G.	Please select
0.61	78.7	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	S.X.	H.G.	Please select
0.55	72.0	Contig8220_at	Contig8220	-	-	6e-1	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.40	53.1	Contig18044_at	Contig18044	-	-	1e+0	At3g47070	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.6	99.2	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
4.1	96.2	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
4.1	96.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	809	HVSMEi0002I06r2_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	C.G.	S.X.	Please select
0.96	0	809	HVSMEi0002I06r2_s_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	C.G.	S.X.	Please select
0.36	8e-166	581	Contig2384_at	Contig2384	-	-	2e-1	At5g25570	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Contig18434_at	Contig18434	-	-	2e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.06	4e-1	34	HW04D13u_at	HW04D13u	-	-	9e+0	At2g19040	RALFL12 (RALF-LIKE 12)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig11159_at	Contig11159	-	-	8e-1	At4g24980	-	C.G.	S.X.	Please select
0.04	2e+0	32	Contig22849_at	Contig22849	-	-	1e-2	At3g63230	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Contig14377_at	Contig14377	-	-	6e+0	At4g02040	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Contig23742_at	Contig23742	-	-	2e-1	At1g05270	TraB family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g02220	821238	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	GmaAffx.92180.1.S1_at	CF807519	-	-	9e-2	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os.1948.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.142540.1.A1_at	CK092514	-	-	2e+0	At2g29860	kelch repeat-containing F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.52046.1.S1_at	CA714126	-	-	1e+0	At3g18470	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1622034_at	CD715701	-	-	1e+0	At5g60670	60S ribosomal protein L12 (RPL12C)	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	Zm.1885.1.A1_at	AW498349	-	-	1e+1	At5g45550	mob1/phocein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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