Gene omics information

Query gene ID	HVSMEh0085G19f_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	HVSMEh0085G19f_at	HVSMEh0085G19f	-	-	3e+0	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	S.X.	H.G.	Please select
0.60	77.3	Contig4494_x_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig223_s_at	Contig223	-	-	8e-1	At5g56900	CwfJ-like family protein / zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig18846_at	Contig18846	-	-	4e+0	At3g27831	-	S.X.	H.G.	Please select
0.48	63.2	baak1o23_s_at	baak1o23	-	-	1e+1	At4g18070	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig24268_at	Contig24268	-	-	2e+0	At5g57345	unknown protein	S.X.	H.G.	Please select
0.43	56.4	HY02G07u_at	HY02G07u	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	99.6	GSM160464	drought control rep1	GSE6990	Barley drought stress
13.7	99.5	GSM261031	Dicktoo-control-rep2	GSE10329	Low temperature stress in cv. Dicktoo
12.8	99.4	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
12.5	99.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
11.2	99.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.9	99.2	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
10.6	99.2	GSM372960	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.2	98.7	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
8.1	98.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.1	98.4	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	3e-72	270	Contig2173_s_at	Contig2173	-	-	8e-6	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	C.G.	S.X.	Please select
0.04	1e+0	32	Contig12481_at	Contig12481	-	-	1e+0	At2g10535	LCR29 (Low-molecular-weight cysteine-rich 29)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig17371_at	Contig17371	-	-	4e-16	At5g50320	ELO3 (ELONGATA 3)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig8373_at	Contig8373	-	-	5e-1	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Contig11461_s_at	Contig11461	-	-	2e+0	At4g29890	choline monooxygenase, putative (CMO-like)	C.G.	S.X.	Please select
0.03	5e+0	30	Contig7650_at	Contig7650	-	-	1e+0	At5g13160	PBS1 (avrPphB susceptible 1)	C.G.	S.X.	Please select
0.01	5e+0	30	Contig6532_at	Contig6532	-	-	4e-25	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	C.G.	S.X.	Please select
0.01	5e+0	30	Contig6120_at	Contig6120	-	-	3e-6	At3g01450	binding	C.G.	S.X.	Please select
0.01	5e+0	30	Contig11660_at	Contig11660	-	-	2e-5	At5g20170	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At1g75510	843887	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	F:RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity;P:transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter;C:transcription factor TFIIF complex, mitochondrion;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	6e-2	38	Glycine max	GmaAffx.27808.1.S1_at	BI893080	-	-	2e-1	At4g09070	-	C.G.	S.X.	Please select
0.15	9e-11	67	Oryza sativa	Os06g0728000	AF541859.1	-	HMGd1 protein (Nucleasome/chromatin assemblyfactor D protein NFD101)	8e-3	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+1	30	Populus trichocarpa	PtpAffx.84065.1.S1_at	BU871668	hypothetical protein	-	2e-1	At5g49620	AtMYB78 (myb domain protein 78)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	3e-15	81	Triticum aestivum	TaAffx.85072.1.S1_at	CA625870	-	-	4e+0	At2g21610	pectinesterase family protein	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1610897_at	CF514653	-	-	4e+0	Atcg01310	-	C.G.	S.X.	Please select
0.06	5e-12	69	Zea mays	Zm.2385.1.S1_at	AF531431.1	DNA-binding protein	-	8e-10	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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