Gene omics information

Query gene ID	HVSMEg0017N16r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	98.7	HVSMEg0017N16r2_at	HVSMEg0017N16r2	-	-	5e+0	At4g04650	-	S.X.	H.G.	Please select
0.55	72.0	EBro08_SQ009_P05_at	EBro08_SQ009_P05	-	-	6e+0	At2g25100	ribonuclease HII family protein	S.X.	H.G.	Please select
0.38	49.5	HV_CEb0021O14f_at	HV_CEb0021O14f	-	-	2e+0	At3g02380	COL2 (constans-like 2)	S.X.	H.G.	Please select
0.36	47.1	Contig25050_at	Contig25050	-	-	4e+0	At5g56450	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.34	43.6	Contig20427_at	Contig20427	-	-	1e+0	At2g48100	exonuclease family protein	S.X.	H.G.	Please select
0.31	38.6	Contig16420_at	Contig16420	-	-	6e-9	At5g06550	-	S.X.	H.G.	Please select
0.29	35.5	rbags10b05_at	rbags10b05	-	-	9e-8	At5g15490	UDP-glucose 6-dehydrogenase, putative	S.X.	H.G.	Please select
0.29	35.5	Contig4339_at	Contig4339	-	-	2e+0	At3g11280	myb family transcription factor	S.X.	H.G.	Please select
0.28	35.5	Contig6780_at	Contig6780	-	-	5e-1	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	S.X.	H.G.	Please select
0.28	35.5	Contig3757_at	Contig3757	-	-	1e-30	At3g12860	nucleolar protein Nop56, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
3.8	95.7	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
3.8	95.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.5	95.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Contig14071_at	Contig14071	NBS-LRR disease resistance protein homologue	-	2e+0	At4g15733	SCRL11 (SCR-Like 11)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig13966_at	Contig13966	-	-	4e-2	At3g17900	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig6341_s_at	Contig6341	-	-	1e-11	At2g01290	ribose-5-phosphate isomerase	C.G.	S.X.	Please select
0.02	6e-1	34	Contig4462_at	Contig4462	-	-	3e-3	At2g18162	CPuORF1 (Conserved peptide upstream open reading frame 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig18851_at	Contig18851	-	-	4e-1	At1g77830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig10352_s_at	Contig10352	-	-	1e-2	At2g36810	binding	C.G.	S.X.	Please select
0.02	2e+0	32	Contig18851_s_at	Contig18851	-	-	4e-1	At1g77830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	HY10I05u_at	HY10I05u	-	-	3e+0	At5g17350	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig20475_at	Contig20475	-	-	2e+0	At2g23067	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At4g04650	825798	-	F:molecular_function unknown;P:response to cold;C:stromule;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.85220.1.S1_at	BE022901	-	-	1e+1	At3g57810	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.16	1e-75	284	Oryza sativa	Os07g0110400	AK058681.1	-	ARM repeat fold domain containing protein	1e-17	At5g15540	EMB2773 (EMBRYO DEFECTIVE 2773)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.106020.1.S1_s_at	BU875835	hypothetical protein	-	2e-5	At4g04910	NSF (N-ethylmaleimide sensitive factor)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-2	38	Triticum aestivum	Ta.12238.1.A1_at	BQ171918	-	-	1e+0	At1g44770	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1615567_at	CF204127.1	-	-	2e-10	At3g02190	60S ribosomal protein L39 (RPL39B)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.9377.1.A1_at	AY109233.1	hypothetical protein LOC100275736	-	4e-1	At3g10610	40S ribosomal protein S17 (RPS17C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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