Gene omics information

Query gene ID	HVSMEg0015I15r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	HVSMEg0015I15r2_at	HVSMEg0015I15r2	-	-	1e-6	At3g48890	ATMP2	S.X.	H.G.	Please select
0.80	92.5	Contig12065_at	Contig12065	-	-	1e+0	At5g61670	-	S.X.	H.G.	Please select
0.61	78.7	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	S.X.	H.G.	Please select
0.61	78.7	Contig4476_at	Contig4476	-	-	7e-26	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	S.X.	H.G.	Please select
0.55	72.0	Contig6329_at	Contig6329	-	-	3e-31	At2g40490	HEME2	S.X.	H.G.	Please select
0.20	21.1	Contig7725_at	Contig7725	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.6	99.6	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.6	99.6	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
10.6	99.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
7.8	98.6	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.8	98.6	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.3	98.5	GSM311249	28-4_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.2	98.5	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
6.2	98.0	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.3	97.4	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	0	640	Contig10724_at	Contig10724	-	-	1e-10	At3g48890	ATMP2	C.G.	S.X.	Please select
0.04	5e-7	54	Contig3554_at	Contig3554	-	-	6e-13	At3g48890	ATMP2	C.G.	S.X.	Please select
0.03	5e-1	34	HVSMEn0017K05r2_at	HVSMEn0017K05r2	-	-	1e+0	At4g09900	MES12 (METHYL ESTERASE 12)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig16225_at	Contig16225	-	-	2e-1	At4g17850	-	C.G.	S.X.	Please select
0.04	2e+0	32	HS05C18u_at	HS05C18u	-	-	1e+1	At5g35470	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	HB06O06r_at	HB06O06r	-	-	1e+1	At5g40382	cytochrome-c oxidase	C.G.	S.X.	Please select
0.02	2e+0	32	Contig19189_at	Contig19189	-	-	2e+0	At4g27070	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig4624_at	Contig4624	-	-	1e-5	At1g70310	SPDS2 (spermidine synthase 2)	C.G.	S.X.	Please select
0.01	8e+0	30	Contig9099_at	Contig9099	-	-	3e-3	At4g26080	ABI1 (ABA INSENSITIVE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-6	54	Arabidopsis thaliana	At3g48890	824050	ATMP2	putative progesterone-binding protein homolog (Atmp2) mRNA,	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-2	40	Glycine max	Gma.2849.2.S1_a_at	BF009344	-	-	1e-32	At3g48890	ATMP2	C.G.	S.X.	Please select
0.05	9e-9	61	Oryza sativa	Os10g0502500	AK061824.1	-	Cytochrome b5 domain containing protein	4e-14	At3g48890	ATMP2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-5	48	Populus trichocarpa	Ptp.2453.1.S1_at	CV284013	hypothetical protein	-	2e-28	At5g52240	MSBP1 (membrane steroid binding protein 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	1e-86	319	Triticum aestivum	Ta.6101.1.S1_at	CD937323	-	-	2e-10	At3g48890	ATMP2	C.G.	S.X.	Please select
0.07	8e-5	46	Vitis vinifera	1609309_at	CF568890	-	-	4e-43	At3g48890	ATMP2	C.G.	S.X.	Please select
0.04	1e-7	56	Zea mays	Zm.14411.1.A1_a_at	AI491646	membrane steroid-binding protein 1	-	7e-16	At3g48890	ATMP2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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