CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HVSMEg0011K10r2_x_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 HVSMEg0011K10r2_x_at HVSMEg0011K10r2 - - 3e+0 At2g30695 - S.X. H.G.
0.71 87.1 Contig3659_at Contig3659 - - 3e-7 At4g29060 emb2726 (embryo defective 2726) S.X. H.G.
0.61 78.7 Contig24657_at Contig24657 - - 2e-2 At5g18940 Mo25 family protein S.X. H.G.
0.50 66.9 Contig2990_at Contig2990 - - 1e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) S.X. H.G.
0.50 66.9 Contig4250_at Contig4250 - - 2e-1 At1g76590 zinc-binding family protein S.X. H.G.
0.40 53.1 rbah59f07_s_at rbah59f07 - - 4e+0 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.9 98.7 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
7.5 98.6 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
5.7 97.7 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM261024 ABA-Early-rep1 GSE10328 ABA experiment
4.3 96.4 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2 96.3 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
4.2 96.3 GSM261064 Xantha s-46 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 726 HVSMEg0011K10r2_at HVSMEg0011K10r2 - - 3e+0 At2g30695 - C.G. S.X.
0.28 9e-150 527 Contig10443_at Contig10443 - - 8e-14 At5g09880 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.04 4e-1 34 Contig20407_at Contig20407 - - 1e+0 At1g36940 unknown protein C.G. S.X.
0.02 1e+0 32 Contig11280_at Contig11280 - - 1e-7 At1g61010 CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) C.G. S.X.
0.03 1e+0 32 Contig3665_at Contig3665 - - 2e+0 At5g38070 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 6e+0 30 EBan01_SQ005_N15_at EBan01_SQ005_N15 - - 4e+0 At5g18400 unknown protein C.G. S.X.
0.02 6e+0 30 Contig17756_at Contig17756 - - 2e+0 At5g56330 ACA8 (ALPHA CARBONIC ANHYDRASE 8) C.G. S.X.
0.02 6e+0 30 Contig6170_s_at Contig6170 - - 1e-1 At4g27890 nuclear movement family protein C.G. S.X.
0.02 6e+0 30 Contig9208_at Contig9208 - - 2e-1 At5g09880 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At2g30695 817620 - F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP - - - C.G. S.X.
0.06 2e-2 40 Glycine max GmaAffx.43913.2.S1_at BE330384 - - 2e-3 At5g09880 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.10 2e-8 59 Oryza sativa Os03g0153000 CB648024 - Splicing factor, CC1-like family protein 2e-9 At2g16940 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.211508.1.S1_at pmrna22549 hypothetical protein - 4e-9 At1g01840 unknown protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.110670.1.S1_at CA656385 - - 1e-2 At4g36800 RCE1 (RUB1 CONJUGATING ENZYME 1) C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1614039_at CF414313 hypothetical protein LOC100246618 - 8e-1 At1g19730 ATTRX4 C.G. S.X.
0.04 5e+0 30 Zea mays Zm.19167.2.A1_x_at CF636656 Hypothetical protein LOC100194096 - 9e+0 At4g13160 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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