CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HVSMEg0001N20r2_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 HVSMEg0001N20r2_at HVSMEg0001N20r2 - - 3e+0 At4g03050 AOP3 S.X. H.G.
0.83 94.0 Contig12402_at Contig12402 - - 3e+0 At3g05490 RALFL22 (ralf-like 22) S.X. H.G.
0.83 94.0 Contig2041_x_at Contig2041 - - 1e+0 At3g61310 DNA-binding family protein S.X. H.G.
0.67 84.7 Contig6006_s_at Contig6006 - - 3e+0 At1g60830 U2 snRNP auxiliary factor large subunit, putative S.X. H.G.
0.61 78.7 Contig8898_at Contig8898 - - 2e-29 At2g25570 binding S.X. H.G.
0.60 77.3 Contig2041_at Contig2041 - - 1e+0 At3g61310 DNA-binding family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 97.6 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.6 96.8 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3 96.4 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.7 95.5 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 34 Contig21185_at Contig21185 - - 4e-1 At3g24710 - C.G. S.X.
0.01 2e+0 32 Contig4155_at Contig4155 - - 2e-38 At5g54310 AGD5 (ARF-GAP domain 5) C.G. S.X.
0.04 2e+0 32 Contig20663_at Contig20663 - - 5e-1 Atmg01310 - C.G. S.X.
0.03 2e+0 32 Contig18828_at Contig18828 - - 6e+0 At5g45690 unknown protein C.G. S.X.
0.02 2e+0 32 Contig16713_at Contig16713 - - 2e+0 At5g54460 wound-responsive protein-related C.G. S.X.
0.01 2e+0 32 Contig3612_at Contig3612 glucose-6-phosphate isomerase - 3e-41 At5g42740 glucose-6-phosphate isomerase, cytosolic (PGIC) C.G. S.X.
0.02 7e+0 30 Contig8276_at Contig8276 - - 2e+0 At3g54290 - C.G. S.X.
0.03 7e+0 30 Contig4401_at Contig4401 - - 1e-19 At4g20150 unknown protein C.G. S.X.
0.03 7e+0 30 HVSMEk0009E14r2_at HVSMEk0009E14r2 - - 7e-2 At4g35770 SEN1 (SENESCENCE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 32 Arabidopsis thaliana At4g03050 828104 AOP3 Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis. - - - C.G. S.X.
0.04 5e+0 32 Glycine max GmaAffx.67662.1.A1_at BE660481 - - 3e+0 At4g27740 - C.G. S.X.
0.03 3e+1 30 Oryza sativa OsAffx.28153.1.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.106329.1.A1_at DN486877 - - 8e-1 At4g02910 unknown protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.106009.1.S1_at CA726450 - - 8e-1 At5g01370 unknown protein C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1614893_at CF568825 - - 1e-3 At1g78950 beta-amyrin synthase, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.2925.3.A1_at CF002413 Ubiquitin - 4e-41 At2g47110 UBQ6 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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