CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HVSMEf0019H05r2_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 HVSMEf0019H05r2_at HVSMEf0019H05r2 - - 6e+0 At5g47050 protein binding / zinc ion binding S.X. H.G.
0.20 21.1 Contig9922_s_at Contig9922 - - 4e+0 At5g49050 - S.X. H.G.
0.20 21.1 Contig13552_at Contig13552 - - 7e-3 At1g15510 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.17 16.9 Contig12625_at Contig12625 - - 5e-11 At1g09440 protein kinase family protein S.X. H.G.
0.05 4.1 Contig13765_at Contig13765 - - 5e-2 At3g07940 zinc finger and C2 domain protein, putative S.X. H.G.
0.05 4.1 Contig15471_at Contig15471 - - 7e+0 At4g17310 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.6 99.8 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
20.1 99.7 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
19.2 99.7 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
16.5 99.6 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
14.8 99.5 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
14.0 99.5 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
13.0 99.4 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
12.7 99.4 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
11.5 99.3 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.1 98.9 GSM146357 Golden Promise Root Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 7e-1 32 Contig2464_at Contig2464 vacuolar ATPase B subunit - 2e-156 At1g20260 hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism C.G. S.X.
0.03 7e-1 32 Contig7507_at Contig7507 - - 4e-1 At5g19810 proline-rich extensin-like family protein C.G. S.X.
0.02 3e+0 30 Contig1637_s_at Contig1637 1,3-beta glucan endohydrolase precursor - 1e-2 At5g20560 beta-1,3-glucanase, putative C.G. S.X.
0.01 3e+0 30 Contig3559_at Contig3559 - - 1e-86 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative C.G. S.X.
0.05 3e+0 30 HU08O22r_at HU08O22r - - 7e-5 At1g31910 GHMP kinase family protein C.G. S.X.
0.02 3e+0 30 Contig3102_at Contig3102 - - 2e-13 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) C.G. S.X.
0.01 3e+0 30 Contig10352_s_at Contig10352 - - 1e-2 At2g36810 binding C.G. S.X.
0.02 3e+0 30 Contig1637_at Contig1637 1,3-beta glucan endohydrolase precursor - 1e-2 At5g20560 beta-1,3-glucanase, putative C.G. S.X.
0.03 3e+0 30 Contig19209_at Contig19209 - - 7e+0 At2g29420 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 30 Arabidopsis thaliana At5g47050 834751 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA - - - C.G. S.X.
0.08 2e+0 32 Glycine max HgAffx.13390.1.S1_at CB374592 - - 7e-1 At1g79430 APL (ALTERED PHLOEM DEVELOPMENT) C.G. S.X.
0.05 1e+1 30 Oryza sativa OsAffx.8806.1.S1_at - - - 0 C.G. S.X.
0.05 2e+0 32 Populus trichocarpa PtpAffx.187.1.A1_at DN488801 - - 1e+0 At2g46910 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.09 1e-4 46 Triticum aestivum Ta.11168.1.A1_at BJ283179 - - 2e+0 At3g04570 DNA-binding protein-related C.G. S.X.
0.05 2e+0 30 Vitis vinifera 1613950_at CF414823 hypothetical protein LOC100255542 - 3e-9 At1g50660 unknown protein C.G. S.X.
0.10 2e+0 30 Zea mays ZmAffx.37.1.S1_at AI657467 - - 5e+0 At3g21338 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage