CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HVSMEf0016E23r2_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 HVSMEf0016E23r2_s_at HVSMEf0016E23r2 - - 9e-1 At2g30130 ASL5 S.X. H.G.
0.50 66.9 Contig21310_at Contig21310 - - 1e-1 At5g24250 unknown protein S.X. H.G.
0.25 28.9 HVSMEn0001D07r2_at HVSMEn0001D07r2 - - 6e-1 At2g25260 unknown protein S.X. H.G.
0.16 15.3 HV12N12u_at HV12N12u - - 7e-2 At5g41200 AGL75 (AGAMOUS-LIKE 75) S.X. H.G.
0.07 5.8 Contig8013_at Contig8013 - - 4e-12 At1g54390 PHD finger protein-related S.X. H.G.
0.06 4.8 Contig2555_at Contig2555 - - 5e-1 At1g47128 RD21 (responsive to dehydration 21) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
62.1 100.0 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
40.8 99.9 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
38.8 99.9 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
35.8 99.9 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
35.4 99.9 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
34.3 99.9 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
33.0 99.9 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
32.1 99.9 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
31.5 99.9 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
25.6 99.8 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 0 718 Contig5587_at Contig5587 - - 8e-1 At2g30130 ASL5 C.G. S.X.
0.76 2e-111 400 Contig5588_at Contig5588 - - 1e+1 Atmg00010 - C.G. S.X.
0.02 4e-1 34 Contig5105_at Contig5105 - - 8e-9 At3g26060 ATPRX Q C.G. S.X.
0.04 2e+0 32 Contig10600_at Contig10600 - - 3e+0 At3g19220 SCO2 (SNOWY COTYLEDON 2) C.G. S.X.
0.03 2e+0 32 Contig15140_at Contig15140 - - 3e-1 At5g05500 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.02 2e+0 32 Contig17501_at Contig17501 - - 3e-2 At5g67520 adenylylsulfate kinase, putative C.G. S.X.
0.02 2e+0 32 Contig14495_at Contig14495 - - 2e+0 At5g15200 40S ribosomal protein S9 (RPS9B) C.G. S.X.
0.01 2e+0 32 Contig13045_at Contig13045 - - 1e+0 At3g46510 PUB13 (PLANT U-BOX 13) C.G. S.X.
0.04 2e+0 32 Contig10600_s_at Contig10600 - - 3e+0 At3g19220 SCO2 (SNOWY COTYLEDON 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-1 34 Arabidopsis thaliana At2g30130 817565 ASL5 Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression. - - - C.G. S.X.
0.04 3e-1 36 Glycine max GmaAffx.46658.1.S1_at BU091132 - - 1e-3 At2g30130 ASL5 C.G. S.X.
0.06 7e-3 42 Oryza sativa Os01g0261600 9629.m01560 - Transferase family protein 3e+0 At5g14380 AGP6 (Arabinogalactan proteins 6) C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.220323.1.S1_at pmrna36694 - - 2e+0 At3g07150 unknown protein C.G. S.X.
0.15 4e-6 52 Triticum aestivum TaAffx.25358.1.S1_at CA720263 - - 1e+0 At5g15480 zinc finger (C2H2 type) family protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1617744_x_at CF205571.1 - - 2e+0 At1g03660 - C.G. S.X.
0.04 2e+0 32 Zea mays Zm.5988.1.A1_at AI666062 legume lectins beta domain containing protein - 8e-1 At5g48350 nucleic acid binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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