Gene omics information

Query gene ID	HVSMEf0011J16r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	HVSMEf0011J16r2_at	HVSMEf0011J16r2	-	-	1e+0	At1g58100	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.67	84.7	Contig4579_s_at	Contig4579	-	-	2e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	S.X.	H.G.	Please select
0.61	78.7	HVSMEf0014C12r2_s_at	HVSMEf0014C12r2	-	-	1e+1	At5g03840	TFL1 (TERMINAL FLOWER 1)	S.X.	H.G.	Please select
0.43	56.4	HW06C04u_x_at	HW06C04u	-	-	7e+0	At3g05980	unknown protein	S.X.	H.G.	Please select
0.36	47.1	HY09E16u_at	HY09E16u	-	-	4e+0	At5g02680	ATP binding / aminoacyl-tRNA ligase/ nucleotide binding	S.X.	H.G.	Please select
0.29	35.5	Contig14732_at	Contig14732	-	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
44.4	99.9	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
41.7	99.9	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
36.9	99.9	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
29.6	99.9	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
26.9	99.8	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
26.0	99.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
24.9	99.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
24.0	99.8	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
18.3	99.7	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.5	99.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-3	42	Contig15220_at	Contig15220	-	-	5e-1	At1g43010	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	8e-3	40	Contig14177_at	Contig14177	-	-	6e-2	At2g04520	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select
0.05	8e-3	40	HA08n04r_s_at	HA08n04r	-	-	9e-14	At1g69620	RPL34 (RIBOSOMAL PROTEIN L34)	C.G.	S.X.	Please select
0.04	3e-2	38	Contig5232_at	Contig5232	-	-	2e-30	At1g69620	RPL34 (RIBOSOMAL PROTEIN L34)	C.G.	S.X.	Please select
0.03	1e-1	36	Contig4222_s_at	Contig4222	-	-	4e-29	At5g09650	AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig11134_at	Contig11134	-	-	5e-1	At5g49210	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	AF108009_at	AF108009	-	-	3e-1	At1g01453	-	C.G.	S.X.	Please select
0.02	1e-1	36	Contig9532_at	Contig9532	-	-	2e+0	At5g23100	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig7759_at	Contig7759	-	-	2e-1	At5g21280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g58100	842177	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-2	40	Glycine max	PsAffx.CL339Contig1_at	PsAffx.CL339Contig1	-	-	1e+0	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select
0.05	2e-3	44	Oryza sativa	OsAffx.26536.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.62743.1.A1_at	CV267782	-	-	4e-1	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-1	36	Triticum aestivum	TaAffx.93946.1.S1_at	BG909873	-	-	5e+0	At5g11600	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1619621_at	CB970760	hypothetical protein LOC100261348	-	1e-18	At5g03880	electron carrier	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.930.1.A1_at	BE129678	-	-	5e+0	At5g06080	LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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