Gene omics information

Query gene ID	HVSMEf0004A21r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	HVSMEf0004A21r2_at	HVSMEf0004A21r2	-	-	2e-1	At2g14045	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig1411_s_at	Contig1411	-	-	6e-5	At4g15210	BAM5 (BETA-AMYLASE 5)	S.X.	H.G.	Please select
0.53	69.7	Contig6845_at	Contig6845	-	-	2e+0	At4g33350	chloroplast inner membrane import protein Tic22, putative	S.X.	H.G.	Please select
0.44	58.9	HVSMEc0011A22r2_at	HVSMEc0011A22r2	-	-	1e+0	At2g41920	protein kinase family protein	S.X.	H.G.	Please select
0.44	58.9	HVSMEc0013C11r2_at	HVSMEc0013C11r2	-	-	7e-2	At2g05600	-	S.X.	H.G.	Please select
0.43	56.4	Contig22781_at	Contig22781	-	-	1e+1	At5g53895	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.9	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.0	97.9	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Contig13235_at	Contig13235	-	-	8e-25	At1g80930	MIF4G domain-containing protein / MA3 domain-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig18687_at	Contig18687	-	-	2e-2	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.02	5e-1	34	Contig14301_at	Contig14301	-	-	5e-1	At3g27906	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12349_at	Contig12349	-	-	2e-3	At1g78895	-	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10586_at	Contig10586	-	-	3e+0	At5g55610	unknown protein	C.G.	S.X.	Please select
0.04	7e+0	30	HZ50F18r_at	HZ50F18r	-	-	3e+0	At5g65030	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	Contig2503_at	Contig2503	-	-	9e-25	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig20886_at	Contig20886	-	-	5e-1	At1g52260	ATPDIL1-5 (PDI-LIKE 1-5)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig15689_at	Contig15689	-	-	2e+0	At3g26470	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	Arabidopsis thaliana	At2g14045	815889	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e+0	32	Glycine max	GmaAffx.61170.1.S1_at	CA801780	-	-	8e-1	At5g57625	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please select
0.08	2e-3	44	Oryza sativa	OsAffx.11306.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.56725.1.A1_at	CV254564	-	-	2e+0	At2g29045	LCR62 (Low-molecular-weight cysteine-rich 62)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	TaAffx.118218.1.S1_at	CA680536	-	-	1e+0	At5g49310	IMPA-5 (IMPORTIN ALPHA ISOFORM 5)	C.G.	S.X.	Please select
0.05	1e+0	32	Vitis vinifera	1612395_s_at	CB974436	-	-	1e+0	At2g31725	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.1125.2.S1_at	CF036557	-	-	4e+0	At5g51860	MADS-box protein (AGL72)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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