Gene omics information

Query gene ID	HVSMEf0003F23r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HVSMEf0003F23r2_at	HVSMEf0003F23r2	-	-	9e-1	At5g09570	-	S.X.	H.G.	Please select
0.50	66.9	Contig4931_at	Contig4931	-	-	1e-22	At1g75850	VPS35B (VPS35 HOMOLOG B)	S.X.	H.G.	Please select
0.44	58.9	Contig9481_at	Contig9481	-	-	2e+0	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	S.X.	H.G.	Please select
0.40	53.1	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	S.X.	H.G.	Please select
0.33	42.6	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	S.X.	H.G.	Please select
0.29	35.5	Contig12297_at	Contig12297	-	-	1e+0	At3g13190	myosin heavy chain-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.3	99.9	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
11.2	99.2	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.8	99.1	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.3	99.0	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1	96.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-10	63	Contig4061_at	Contig4061	-	-	2e-2	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.04	1e-1	34	Contig4062_at	Contig4062	-	-	3e-2	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.02	5e-1	32	Contig15281_at	Contig15281	-	-	2e-10	At1g15780	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	30	Contig16821_at	Contig16821	-	-	4e+0	Atmg00280	-	C.G.	S.X.	Please select
0.08	2e+0	30	HF25F14r_s_at	HF25F14r	-	-	7e+0	At5g44850	-	C.G.	S.X.	Please select
0.03	2e+0	30	Contig4457_at	Contig4457	-	-	1e-1	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.04	2e+0	30	HVSMEm0018N06r2_at	HVSMEm0018N06r2	-	-	4e+0	At5g50000	protein kinase, putative	C.G.	S.X.	Please select
0.02	2e+0	30	Contig9319_at	Contig9319	-	-	3e-3	At3g66654	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please select
0.05	7e+0	28	HVSMEb0009E07r2_s_at	HVSMEb0009E07r2	-	-	8e-1	At5g42270	VAR1 (VARIEGATED 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	9e-1	32	Arabidopsis thaliana	At5g09570	830816	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-1	34	Glycine max	GmaAffx.66873.1.S1_at	AW760345	-	-	1e-2	At3g49300	proline-rich family protein	C.G.	S.X.	Please select
0.02	7e+0	30	Oryza sativa	Os03g0845800	AK109563.1	-	Hypothetical protein	2e+0	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	3e-1	34	Populus trichocarpa	PtpAffx.217582.1.S1_at	pmrna32911	hypothetical protein	-	3e-3	At4g25790	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	1e+0	32	Triticum aestivum	Ta.12256.1.A1_at	BQ171958	-	-	7e-1	At2g17800	ARAC1	C.G.	S.X.	Please select
0.09	4e+0	28	Vitis vinifera	1612348_x_at	CF206007.1	-	-	2e-2	At5g23903	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	30	Zea mays	Zm.10329.1.S1_at	BQ163458	hypothetical protein LOC100279503	-	1e+0	At5g20500	glutaredoxin, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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