Gene omics information

Query gene ID	HVSMEc0011A22r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.1	HVSMEc0011A22r2_at	HVSMEc0011A22r2	-	-	1e+0	At2g41920	protein kinase family protein	S.X.	H.G.	Please select
0.74	89.1	HVSMEc0013C11r2_at	HVSMEc0013C11r2	-	-	7e-2	At2g05600	-	S.X.	H.G.	Please select
0.63	80.3	HVSMEc0010O09r2_at	HVSMEc0010O09r2	-	-	1e+0	At5g28630	glycine-rich protein	S.X.	H.G.	Please select
0.60	77.3	HK05N20r_at	HK05N20r	-	-	3e+0	Atcg00790	-	S.X.	H.G.	Please select
0.46	61.0	HVSMEf0004A21r2_at	HVSMEf0004A21r2	-	-	2e-1	At2g14045	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig10750_at	Contig10750	-	-	1e-4	At1g51600	TIFY2A	S.X.	H.G.	Please select
0.42	55.2	Contig25750_at	Contig25750	-	-	4e+0	At5g07880	SNAP29	S.X.	H.G.	Please select
0.40	53.1	Contig22141_at	Contig22141	-	-	3e+0	At3g07440	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.9	99.9	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
32.6	99.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.9	99.4	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
12.3	99.4	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.7	99.3	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
10.5	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
10.2	99.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.4	99.0	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
9.4	99.0	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2	98.5	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	6e-7	54	Contig16476_at	Contig16476	-	-	2e+0	At2g04395	DNA binding	C.G.	S.X.	Please select
0.04	3e-2	38	Contig15188_at	Contig15188	-	-	8e-2	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please select
0.02	1e-1	36	Contig10905_at	Contig10905	-	-	2e-3	At1g47490	ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig17959_at	Contig17959	-	-	7e-1	At4g27240	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig10568_at	Contig10568	-	-	4e-5	At3g62770	AtATG18a	C.G.	S.X.	Please select
0.01	1e-1	36	Contig3711_at	Contig3711	-	-	2e-26	At1g79600	ABC1 family protein	C.G.	S.X.	Please select
0.01	5e-1	34	Contig12871_at	Contig12871	-	-	1e-9	At3g58630	transcription factor	C.G.	S.X.	Please select
0.04	5e-1	34	Contig8457_at	Contig8457	-	-	2e-5	At2g22080	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Contig7538_at	Contig7538	-	-	8e-11	At5g14420	RGLG2 (RING domain Ligase2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At2g41920	818792	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	Gma.16995.1.S1_at	BQ742116	-	-	1e-3	At2g23320	WRKY15	C.G.	S.X.	Please select
0.04	2e-3	44	Oryza sativa	Os10g0411100	9638.m02323	-	Conserved hypothetical protein	8e-2	At2g35430	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.149130.1.A1_at	CK089508	-	-	2e+0	At5g17140	cysteine proteinase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-1	36	Triticum aestivum	TaAffx.55786.1.S1_at	CA661305	-	-	6e-1	At1g13607	-	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1607329_at	CF568978	-	-	3e-53	At1g10670	ACLA-1	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.2258.1.A1_at	AY112615.1	-	-	1e+0	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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