Gene omics information

Query gene ID	HVSMEc0011A03f_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	HVSMEc0011A03f_at	HVSMEc0011A03f	-	-	1e-23	Atcg00520	-	S.X.	H.G.	Please select
0.40	53.1	Contig11095_at	Contig11095	-	-	2e-4	At3g19895	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig9355_s_at	Contig9355	-	-	7e+0	At5g55510	P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter	S.X.	H.G.	Please select
0.21	22.6	Contig18484_at	Contig18484	-	-	7e+0	At5g64480	unknown protein	S.X.	H.G.	Please select
0.13	11.6	Contig20359_at	Contig20359	-	-	2e+0	At4g26110	NAP1	S.X.	H.G.	Please select
0.11	9.4	Contig2475_at	Contig2475	-	-	7e-2	At4g11870	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.9	99.1	GSM261051	Bonus Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.4	98.8	GSM261050	Bonus Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.9	98.3	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.6	98.2	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-4	44	Contig14011_at	Contig14011	-	-	1e-1	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.03	1e-2	38	Contig10958_at	Contig10958	-	-	2e-6	At1g57540	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Contig10860_at	Contig10860	-	-	1e+0	At5g49860	jacalin lectin family protein	C.G.	S.X.	Please select
0.02	4e+0	30	Contig13212_at	Contig13212	-	-	5e-5	At4g00830	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	4e+0	30	Contig20267_at	Contig20267	-	-	4e+0	At5g42070	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	HX04O22u_at	HX04O22u	-	-	5e+0	At5g04340	ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)	C.G.	S.X.	Please select
0.04	4e+0	30	HU04J01u_at	HU04J01u	-	-	4e+0	At5g42980	ATTRX3 (THIOREDOXIN 3)	C.G.	S.X.	Please select
0.03	4e+0	30	Contig20468_at	Contig20468	-	-	1e+0	At4g04404	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	4e+0	30	Contig9573_at	Contig9573	-	-	4e-9	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	1e-23	109	Arabidopsis thaliana	Atcg00520	-	-	Encodes a protein required for photosystem I assembly and stability. In cyanobacteria, loss of function mutation in this gene increases PSII/PSI ratio without any influence on photoautotrophic growth.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e+0	32	Glycine max	HgAffx.19270.1.S1_at	CA939910	-	-	3e+0	At5g01570	unknown protein	C.G.	S.X.	Please select
0.48	1e-92	339	Oryza sativa	OsAffx.32257.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	2e-38	159	Populus trichocarpa	Ptp.7514.1.S1_at	CK109314	hypothetical protein	-	9e-152	Atcg00520	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	1e-125	448	Triticum aestivum	TaAffx.6885.1.S1_at	CA671515	-	-	2e-27	Atcg00520	-	C.G.	S.X.	Please select
0.08	4e-2	36	Vitis vinifera	1618438_at	CF204732.1	-	-	2e+0	At1g29060	-	C.G.	S.X.	Please select
0.50	8e-103	371	Zea mays	ZmAffx.1465.1.S1_at	11990232-32	-	-	9e-60	Atcg00520	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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