CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HVSMEc0010O09r2_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 66.9 HVSMEc0010O09r2_at HVSMEc0010O09r2 - - 1e+0 At5g28630 glycine-rich protein S.X. H.G.
0.80 92.5 Contig15729_at Contig15729 - - 3e-2 At3g11280 myb family transcription factor S.X. H.G.
0.72 87.4 Contig7120_at Contig7120 - - 4e-18 At1g55880 pyridoxal-5'-phosphate-dependent enzyme, beta family protein S.X. H.G.
0.70 86.0 Contig327_s_at Contig327 - - 2e-2 At2g23310 ATRER1C1 S.X. H.G.
0.61 78.7 Contig4455_at Contig4455 - - 5e-1 At5g05370 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative S.X. H.G.
0.60 77.3 Contig6638_at Contig6638 - - 1e+0 At1g21880 LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR) S.X. H.G.
0.59 75.8 Contig11988_at Contig11988 - - 1e-1 At3g18490 aspartyl protease family protein S.X. H.G.
0.57 74.9 Contig3480_at Contig3480 - - 4e-1 At5g16660 unknown protein S.X. H.G.
0.50 66.9 Contig14638_at Contig14638 - - 4e-35 At4g30800 40S ribosomal protein S11 (RPS11B) S.X. H.G.
0.50 66.9 Contig22141_at Contig22141 - - 3e+0 At3g07440 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
65.7 100.0 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
60.6 100.0 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
48.7 99.9 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
16.2 99.6 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.4 99.0 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.7 98.9 GSM261040 Dicktoo-deacclimation-rep2 GSE10329 Low temperature stress in cv. Dicktoo
7.0 98.4 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
6.4 98.1 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
6.1 98.0 GSM261030 Dicktoo-control-rep1 GSE10329 Low temperature stress in cv. Dicktoo
5.9 97.9 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-2 38 Contig10147_s_at Contig10147 - - 1e+0 At4g09950 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein C.G. S.X.
0.04 3e-2 38 Contig10147_at Contig10147 - - 1e+0 At4g09950 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein C.G. S.X.
0.01 1e-1 36 Contig5853_at Contig5853 - - 3e-1 At1g64140 - C.G. S.X.
0.03 1e-1 36 Contig5446_s_at Contig5446 - - 1e+0 At3g46070 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 1e-1 36 Contig4852_at Contig4852 - - 7e-8 At5g55530 C2 domain-containing protein C.G. S.X.
0.04 5e-1 34 EBro02_SQ007_A14_at EBro02_SQ007_A14 - - 7e-1 At1g03960 calcium-binding EF hand family protein C.G. S.X.
0.03 5e-1 34 Contig24710_at Contig24710 - - 2e-36 At3g45180 ubiquitin family protein C.G. S.X.
0.03 5e-1 34 Contig23625_at Contig23625 - - 2e+0 At2g20619 - C.G. S.X.
0.03 5e-1 34 Contig19713_at Contig19713 - - 4e+0 At5g05830 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At5g28630 832966 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA - - - C.G. S.X.
0.05 4e-1 36 Glycine max HgAffx.16152.1.S1_at CB280204 - - 2e+0 At5g05598 - C.G. S.X.
0.24 1e-54 214 Oryza sativa Os06g0132500 9634.m00329 - Alpha/beta hydrolase family protein 1e-2 At1g64670 BDG1 (BODYGUARD1) C.G. S.X.
0.05 2e-2 40 Populus trichocarpa PtpAffx.75623.1.A1_at CV262981 - - 1e+1 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.62 2e-76 286 Triticum aestivum TaAffx.86408.2.S1_at CA653379 - - 4e-3 At1g64670 BDG1 (BODYGUARD1) C.G. S.X.
0.05 3e-1 34 Vitis vinifera 1615335_s_at CF205989.1 hypothetical protein LOC100241327 - 2e+0 At4g15760 MO1 (MONOOXYGENASE 1) C.G. S.X.
0.04 4e-1 34 Zea mays Zm.8175.1.A1_at BM382448 - - 5e-6 At2g39350 ABC transporter family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage