CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HVSMEc0009P17f_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 80.3 HVSMEc0009P17f_s_at HVSMEc0009P17f - - 1e-2 At3g10280 KCS14 (3-KETOACYL-COA SYNTHASE 14) S.X. H.G.
0.75 89.5 HV12H12u_at HV12H12u - - 2e-45 At4g05050 UBQ11 (UBIQUITIN 11) S.X. H.G.
0.69 85.5 HP01O07w_at HP01O07w - - 3e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) S.X. H.G.
0.67 84.7 Contig18430_at Contig18430 - - 2e-2 At1g18340 basal transcription factor complex subunit-related S.X. H.G.
0.64 80.9 Contig20065_at Contig20065 - - 4e-1 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) S.X. H.G.
0.58 74.9 Mla12DH_orf_3pri12_at Mla12DH_orf_3pri12 - - 6e-1 At4g23620 50S ribosomal protein-related S.X. H.G.
0.57 74.9 Contig7945_at Contig7945 - - 6e-57 At1g53310 ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1) S.X. H.G.
0.57 74.9 Contig3565_s_at Contig3565 - - 2e-1 At4g01430 nodulin MtN21 family protein S.X. H.G.
0.56 74.3 Contig16389_at Contig16389 - - 4e-9 At3g20440 alpha-amylase/ catalytic/ cation binding S.X. H.G.
0.56 74.3 Contig13565_at Contig13565 - - 9e+0 At4g29770 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.4 99.8 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
20.6 99.7 GSM71153 Barke stress and unstress replicate 4 GSE3170 Barley single feature polymorphisms and drought stress gene expression
15.2 99.5 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
14.0 99.5 GSM71148 OWB-R unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
10.9 99.2 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
10.1 99.1 GSM130799 control, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
9.2 99.0 GSM261026 ABA-Early-rep3 GSE10328 ABA experiment
8.5 98.8 GSM71152 Barke stress and unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
8.2 98.7 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
7.8 98.6 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 0 724 Contig5664_at Contig5664 - - 1e-2 At1g25450 KCS5 (3-KETOACYL-COA SYNTHASE 5) C.G. S.X.
0.44 5e-90 329 Contig20877_at Contig20877 - - 5e-6 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) C.G. S.X.
0.30 5e-84 309 Contig18311_at Contig18311 very long chain fatty acid condensing enzyme CUT1;1-like - 8e+0 At5g18748 unknown protein C.G. S.X.
0.27 2e-71 268 Contig6409_at Contig6409 - - 1e-11 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
0.31 3e-51 200 HVSMEb0010E16r2_s_at HVSMEb0010E16r2 very long chain fatty acid condensing enzyme CUT1;1-like - 1e+1 At4g11190 disease resistance-responsive family protein / dirigent family protein C.G. S.X.
0.26 1e-35 149 Contig22130_at Contig22130 - - 5e-6 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.22 1e-35 149 Contig17547_at Contig17547 - - 7e-7 At1g25450 KCS5 (3-KETOACYL-COA SYNTHASE 5) C.G. S.X.
0.09 6e-25 113 Contig4206_at Contig4206 FIDDLEHEAD very long chain fatty acid condensing enzyme FDH;1-like - 4e-3 At2g26250 KCS10 (3-KETOACYL-COA SYNTHASE 10) C.G. S.X.
0.08 6e-22 103 Contig5663_at Contig5663 - - 7e-11 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-2 40 Arabidopsis thaliana At3g10280 820190 KCS14 (3-KETOACYL-COA SYNTHASE 14) Encodes KCS14, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). - - - C.G. S.X.
0.11 6e-12 71 Glycine max GmaAffx.73570.1.S1_at BG316320 - - 4e-22 At1g01120 KCS1 (3-KETOACYL-COA SYNTHASE 1) C.G. S.X.
0.27 3e-88 325 Oryza sativa Os02g0731900 9630.m04890 - Naringenin-chalcone synthase family protein 1e-2 At1g68530 KCS6 (3-KETOACYL-COA SYNTHASE 6) C.G. S.X.
0.03 5e+0 32 Populus trichocarpa PtpAffx.211736.1.S1_at pmrna23000 hypothetical protein - 1e+0 At5g07910 leucine-rich repeat family protein C.G. S.X.
0.41 1e-95 349 Triticum aestivum Ta.25256.1.A1_at CD454339 - - 3e-1 At2g26640 KCS11 (3-KETOACYL-COA SYNTHASE 11) C.G. S.X.
0.09 7e-8 56 Vitis vinifera 1619011_at CF208055 hypothetical protein LOC100247295 - 7e-8 At1g04220 KCS2 (3-KETOACYL-COA SYNTHASE 2) C.G. S.X.
0.47 9e-67 252 Zea mays Zm.9456.1.A1_at BM341648 hypothetical protein LOC100191738 - 5e+0 At4g28020 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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