Gene omics information

Query gene ID	HVSMEc0001C18f2_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	HVSMEc0001C18f2_s_at	HVSMEc0001C18f2	-	-	7e-1	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	S.X.	H.G.	Please select
0.40	53.1	Contig5562_s_at	Contig5562	-	-	1e-3	At3g51550	FER (FERONIA)	S.X.	H.G.	Please select
0.38	49.5	Contig2616_at	Contig2616	-	-	2e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.27	32.1	Contig2833_at	Contig2833	-	-	9e-3	At5g15090	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)	S.X.	H.G.	Please select
0.25	28.9	Contig6811_s_at	Contig6811	-	-	5e-1	At1g26470	-	S.X.	H.G.	Please select
0.14	12.9	Contig5927_at	Contig5927	-	-	1e-1	At1g22480	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	99.5	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
13.8	99.5	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
10.4	99.2	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.0	98.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.8	98.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.8	98.6	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.8	98.6	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.4	98.5	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	1e-161	567	HVSMEc0001C18f2_at	HVSMEc0001C18f2	-	-	7e-1	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	C.G.	S.X.	Please select
0.20	1e-127	454	Contig3135_at	Contig3135	-	-	3e-1	At3g03450	RGL2 (RGA-LIKE 2)	C.G.	S.X.	Please select
0.02	9e-2	36	Contig9427_at	Contig9427	-	-	7e-1	At3g22800	leucine-rich repeat family protein / extensin family protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig6073_at	Contig6073	-	-	6e-1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.02	1e+0	32	Contig12667_at	Contig12667	-	-	2e+0	At1g54540	-	C.G.	S.X.	Please select
0.03	1e+0	32	HF01A04w_s_at	HF01A04w	-	-	1e+0	At5g45700	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	X17220.1_at	X17220.1	-	-	2e+1	Atmg00900	-	C.G.	S.X.	Please select
0.04	6e+0	30	S0000800234C01F1_s_at	S0000800234C01F1	-	-	4e+0	At4g16805	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	HT03K14r_s_at	HT03K14r	-	-	2e-1	At5g02060	integral membrane protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-1	34	Arabidopsis thaliana	At2g43018	6241154	CPuORF17 (Conserved peptide upstream open reading frame 17)	Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF17 represents a conserved upstream opening reading frame relative to major ORF AT2G43020.1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.74105.1.S1_at	BQ298784	-	-	8e-1	At2g43280	far-red impaired responsive family protein / FAR1 family protein	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	OsAffx.22980.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.214248.1.S1_at	pmrna27720	hypothetical protein	-	1e+1	At5g40630	ubiquitin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	9e-16	83	Triticum aestivum	Ta.18127.1.A1_at	CA629565	-	-	2e+0	At1g32975	unknown protein	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1617036_at	CF210807	hypothetical protein LOC100243315	-	2e-5	At3g21070	NADK1 (NAD KINASE 1)	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	Zm.974.1.A1_at	BE638677	-	-	6e-1	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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