Gene omics information

Query gene ID	HVSMEb0009N20r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	85.5	HVSMEb0009N20r2_at	HVSMEb0009N20r2	-	-	6e+0	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	S.X.	H.G.	Please select
0.44	58.9	Contig1434_s_at	Contig1434	-	-	2e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	S.X.	H.G.	Please select
0.44	58.9	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	S.X.	H.G.	Please select
0.42	55.2	HU13K14u_at	HU13K14u	-	-	4e-2	At2g30530	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig3976_at	Contig3976	-	-	5e+0	At5g33330	RNase H domain-containing protein	S.X.	H.G.	Please select
0.40	53.1	Contig16455_at	Contig16455	-	-	1e-1	At3g46880	unknown protein	S.X.	H.G.	Please select
0.37	47.9	Contig14264_at	Contig14264	-	-	2e+0	At1g48780	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig119_at	Contig119	-	-	1e-6	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.32	40.3	Contig255_at	Contig255	-	-	4e+0	At3g53670	unknown protein	S.X.	H.G.	Please select
0.32	40.3	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.1	99.2	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
9.3	99.0	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
8.4	98.8	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.0	98.4	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.6	96.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	32	Contig342_at	Contig342	-	-	2e-12	At4g16580	catalytic	C.G.	S.X.	Please select
0.02	8e-1	32	Contig16651_at	Contig16651	-	-	3e+0	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select
0.04	3e+0	30	Contig15395_at	Contig15395	-	-	4e-3	At3g55646	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	30	Contig12994_at	Contig12994	-	-	4e-5	At1g14620	DECOY (DECOY)	C.G.	S.X.	Please select
0.03	3e+0	30	Contig26465_at	Contig26465	-	-	2e+0	At1g63420	-	C.G.	S.X.	Please select
0.03	3e+0	30	Contig15396_at	Contig15396	-	-	1e+0	At1g25425	CLE43 (CLAVATA3/ESR-RELATED 43)	C.G.	S.X.	Please select
0.04	3e+0	30	Contig15395_s_at	Contig15395	-	-	4e-3	At3g55646	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	30	Contig14401_at	Contig14401	-	-	6e+0	At5g05830	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	30	Contig13826_at	Contig13826	-	-	2e-1	At4g02730	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	30	Arabidopsis thaliana	At3g50960	824260	PLP3a (Phosducin-like protein 3 homolog)	Encodes a protein that functions in microtubule assembly. PLP3a can bind to several different tubulin family members in Y2H assays. Plants with reduced levels of both PLP3a and PLP3b (At5g66410) show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e+0	32	Glycine max	PsAffx.psMY005iA04r_at	PsAffx.psMY005iA04r	-	-	3e-1	At5g62420	aldo/keto reductase family protein	C.G.	S.X.	Please select
0.06	8e-1	34	Oryza sativa	Os06g0657901	NM_193102.1	-	-	2e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e+0	30	Populus trichocarpa	PtpAffx.24372.1.A1_at	CV262614	hypothetical protein	-	6e-12	At4g26640	WRKY20	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	7e+0	30	Triticum aestivum	TaAffx.56984.1.S1_at	CA638972	-	-	5e-1	At1g61280	-	C.G.	S.X.	Please select
0.05	2e+0	30	Vitis vinifera	1610648_s_at	CB343030	hypothetical protein LOC100243726	-	4e+0	At3g58550	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	3e+0	30	Zea mays	Zm.6177.2.A1_at	CF634497	hypothetical protein LOC100194333	-	1e-7	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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