Gene omics information

Query gene ID	HVSMEb0005F19r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	HVSMEb0005F19r2_at	HVSMEb0005F19r2	-	-	3e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	S.X.	H.G.	Please select
0.71	87.1	HO11K23S_s_at	HO11K23S	-	-	4e+0	At3g17420	GPK1	S.X.	H.G.	Please select
0.67	84.7	Contig7635_s_at	Contig7635	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	S.X.	H.G.	Please select
0.63	80.3	HVSMEb0005H04r2_at	HVSMEb0005H04r2	-	-	2e+0	At3g44755	unknown protein	S.X.	H.G.	Please select
0.59	75.8	Contig20065_at	Contig20065	-	-	4e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please select
0.48	63.2	Contig6960_at	Contig6960	-	-	1e+0	At4g29770	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
180.7	100.0	GSM281749	Genotype: Morex - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
106.8	100.0	GSM281748	Genotype: Morex - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
81.9	100.0	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
3.3	94.6	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
3.0	93.8	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.3	90.9	GSM160744	drought control rep2	GSE6990	Barley drought stress
2.3	90.9	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
1.9	88.2	GSM160815	drought control rep3	GSE6990	Barley drought stress
1.7	86.5	GSM261050	Bonus Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
1.4	83.1	GSM160464	drought control rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	890	Contig20235_s_at	Contig20235	-	-	3e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	C.G.	S.X.	Please select
0.02	5e-1	34	Contig615_at	Contig615	-	-	8e+0	At2g33810	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig8100_at	Contig8100	-	-	1e-24	At5g22000	RHF2A (RING-H2 GROUP F2A)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig13549_at	Contig13549	-	-	2e+0	At3g20230	50S ribosomal protein L18 family	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10156_s_at	Contig10156	-	-	6e-1	At4g35295	homoserine kinase, putative / HSK, putative	C.G.	S.X.	Please select
0.04	2e+0	32	EBpi01_SQ003_I06_at	EBpi01_SQ003_I06	-	-	8e-1	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.03	2e+0	32	Contig18223_at	Contig18223	-	-	1e+0	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10156_at	Contig10156	-	-	6e-1	At4g35295	homoserine kinase, putative / HSK, putative	C.G.	S.X.	Please select
0.02	9e+0	30	Contig4041_at	Contig4041	-	-	2e+0	At1g80420	DNA repair protein, putative (XRCC1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Arabidopsis thaliana	At4g09010	826480	APX4 (ASCORBATE PEROXIDASE 4)	Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.22127.1.S1_at	BI396953	-	-	2e-1	At1g33820	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os09g0492800	9637.m02797	-	-	1e-1	At1g48770	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.208355.1.S1_at	pmrna16612	hypothetical protein	-	7e-1	At4g24110	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	7e-67	254	Triticum aestivum	Ta.601.1.A1_at	BE489046	-	-	4e+0	At5g67140	F-box family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1621762_at	CF371697	hypothetical protein LOC100242812	-	6e-30	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.8836.1.A1_a_at	BM075841	-	-	2e+1	At5g41660	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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