Gene omics information

Query gene ID	HVSMEa0015E13r2_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HVSMEa0015E13r2_s_at	HVSMEa0015E13r2	-	-	3e+0	At2g10550	-	S.X.	H.G.	Please select
0.36	47.1	HM14G18r_at	HM14G18r	-	-	8e+0	At4g21902	unknown protein	S.X.	H.G.	Please select
0.31	38.6	HS09A23u_x_at	HS09A23u	-	-	3e+0	At5g20165	unknown protein	S.X.	H.G.	Please select
0.19	19.6	HC113G05_SK_at	HC113G05_SK	-	-	1e+0	At4g14342	pre-mRNA splicing factor 10 kDa subunit, putative	S.X.	H.G.	Please select
0.13	11.6	Contig10681_at	Contig10681	-	-	1e-1	At3g19480	D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative	S.X.	H.G.	Please select
0.06	4.8	Contig23458_at	Contig23458	-	-	5e+0	At5g48950	thioesterase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.8	99.9	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
27.7	99.8	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
26.0	99.8	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
22.5	99.8	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
20.9	99.7	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
20.2	99.7	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
17.8	99.7	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
17.2	99.6	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
16.4	99.6	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
16.4	99.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	4e-84	309	Contig9152_at	Contig9152	-	-	4e-1	At3g59370	unknown protein	C.G.	S.X.	Please select
0.04	2e-3	42	HVSMEm0002N22r2_at	HVSMEm0002N22r2	-	-	4e+0	At4g17760	damaged DNA binding / exodeoxyribonuclease III	C.G.	S.X.	Please select
0.07	2e-3	42	Contig19500_at	Contig19500	-	-	7e+0	At5g09805	IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)	C.G.	S.X.	Please select
0.04	2e-3	42	HVSMEn0015O13r2_at	HVSMEn0015O13r2	-	-	1e+0	At4g29470	phospholipase A2, putative	C.G.	S.X.	Please select
0.02	2e-3	42	Contig14534_at	Contig14534	-	-	7e-1	At1g64930	CYP89A7	C.G.	S.X.	Please select
0.03	6e-3	40	Contig14078_at	Contig14078	-	-	2e-21	At4g01800	preprotein translocase secA subunit, putative	C.G.	S.X.	Please select
0.03	6e-3	40	Contig12056_s_at	Contig12056	-	-	1e-1	At5g38720	unknown protein	C.G.	S.X.	Please select
0.03	6e-3	40	Contig12056_at	Contig12056	-	-	1e-1	At5g38720	unknown protein	C.G.	S.X.	Please select
0.04	6e-3	40	Contig7786_at	Contig7786	-	-	1e+0	At5g19570	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At2g10550	815515	-	F:unknown;P:unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-2	38	Glycine max	PsAffx.psHB040xB21f_s_at	PsAffx.psHB040xB21f	-	-	6e-1	At2g20613	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	36	Oryza sativa	Os02g0481400	9630.m02667	-	-	2e+0	At3g10400	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.221425.1.S1_at	pmrna38307	hypothetical protein	-	1e+0	At5g58110	ATPase activator/ chaperone binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	2e-16	85	Triticum aestivum	Ta.1165.1.A1_at	AF207545.1	WCOR14a	-	2e+0	At3g06590	transcription factor	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1611496_at	CF210499	hypothetical protein LOC100245510	-	1e+0	At2g43930	protein kinase family protein	C.G.	S.X.	Please select
0.05	1e+0	32	Zea mays	Zm.6872.1.A1_at	AI065521	-	-	2e+0	At1g27920	MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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