Gene omics information

Query gene ID	HVSMEa0008L11r2_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HVSMEa0008L11r2_at	HVSMEa0008L11r2	-	-	2e-1	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	S.X.	H.G.	Please select
0.12	10.4	Contig6211_at	Contig6211	-	-	8e-9	At1g04630	MEE4 (maternal effect embryo arrest 4)	S.X.	H.G.	Please select
0.11	9.4	Contig5810_s_at	Contig5810	-	-	5e-2	At4g23410	TET5 (TETRASPANIN5)	S.X.	H.G.	Please select
0.06	4.8	Contig3810_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	S.X.	H.G.	Please select
0.03	2.6	HD07I22r_s_at	HD07I22r	-	-	5e+0	At4g21090	adrenodoxin-like ferredoxin 1	S.X.	H.G.	Please select
0.02	1.8	Contig191_s_at	Contig191	-	-	7e-6	At2g33740	CUTA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
55.4	100.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
55.3	100.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
31.9	99.9	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
23.3	99.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
19.4	99.7	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.3	99.7	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.0	99.7	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
15.0	99.5	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
14.9	99.5	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
9.7	99.0	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-2	36	Contig23469_at	Contig23469	-	-	7e+0	At4g25200	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	C.G.	S.X.	Please select
0.02	8e-2	36	Contig6214_at	Contig6214	-	-	2e-1	At3g50930	BCS1 (CYTOCHROME BC1 SYNTHESIS)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig6946_at	Contig6946	-	-	1e-5	At5g01200	myb family transcription factor	C.G.	S.X.	Please select
0.03	1e+0	32	Contig11410_at	Contig11410	-	-	4e-1	At5g47150	YDG/SRA domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig15386_at	Contig15386	-	-	2e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig11466_at	Contig11466	-	-	6e-4	At4g12070	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig8917_at	Contig8917	-	-	8e-3	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig1839_at	Contig1839	-	-	1e-2	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	C.G.	S.X.	Please select
0.03	5e+0	30	Contig16506_at	Contig16506	-	-	1e-13	At3g27020	YSL6 (YELLOW STRIPE LIKE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At3g50960	824260	PLP3a (Phosducin-like protein 3 homolog)	Encodes a protein that functions in microtubule assembly. PLP3a can bind to several different tubulin family members in Y2H assays. Plants with reduced levels of both PLP3a and PLP3b (At5g66410) show defects in cytokinesis, cortical microtubule array formation, oriented cell growth, and maintenance of proper ploidy.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-1	34	Glycine max	GmaAffx.82172.3.S1_at	BM520804	-	-	3e-1	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.05	4e-7	56	Oryza sativa	Os06g0643500	AK103715.1	-	ADR11 protein (Fragment)	3e+0	At1g74060	60S ribosomal protein L6 (RPL6B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-1	36	Populus trichocarpa	PtpAffx.4493.4.A1_at	CV262264	-	-	8e-1	At5g43570	serine-type endopeptidase inhibitor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	5e-5	48	Triticum aestivum	Ta.13771.1.S1_at	AL820976	-	-	3e+0	At1g70440	SRO3 (SIMILAR TO RCD ONE 3)	C.G.	S.X.	Please select
0.04	5e-2	36	Vitis vinifera	1607162_s_at	CF512517	-	-	3e+0	At2g30570	PSBW (PHOTOSYSTEM II REACTION CENTER W)	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	Zm.17538.1.S1_at	CK370571	hypothetical protein LOC100273692	-	1e+0	At5g50710	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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