Gene omics information

Query gene ID	HV10L10u_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	85.5	HV10L10u_at	HV10L10u	-	-	3e+0	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	S.X.	H.G.	Please select
0.80	92.5	Contig20150_at	Contig20150	-	-	1e-5	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select
0.78	91.2	Contig3163_at	Contig3163	-	-	7e-1	At3g52540	OFP18 (OVATE FAMILY PROTEIN 18)	S.X.	H.G.	Please select
0.67	84.7	Contig11168_at	Contig11168	-	-	1e-15	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	S.X.	H.G.	Please select
0.63	80.3	Contig11041_at	Contig11041	-	-	1e+0	At3g08940	LHCB4.2 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.63	80.3	Contig11519_at	Contig11519	-	-	2e-4	At1g66680	AR401	S.X.	H.G.	Please select
0.57	74.9	Contig6254_at	Contig6254	-	-	3e+0	At2g37950	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.50	66.9	Contig4511_at	Contig4511	SGT1 protein	-	1e-11	At4g11260	SGT1B	S.X.	H.G.	Please select
0.44	58.9	Contig5149_at	Contig5149	-	-	4e-2	At1g66670	CLPP3	S.X.	H.G.	Please select
0.42	55.2	Contig20856_at	Contig20856	-	-	3e-1	At4g14830	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.6	99.8	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
13.1	99.4	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.4	99.3	GSM363468	10 mM B(OH)3 treatment (10B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
10.5	99.2	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.5	99.2	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
9.5	99.0	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.8	98.6	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.6	98.6	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.1	98.4	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	837	HV10L10u_s_at	HV10L10u	-	-	3e+0	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	C.G.	S.X.	Please select
0.69	0	650	Contig13357_at	Contig13357	-	-	9e-2	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.05	2e+0	32	HVSMEl0003E06r2_at	HVSMEl0003E06r2	-	-	8e+0	At5g28060	40S ribosomal protein S24 (RPS24B)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8988_at	Contig8988	-	-	7e-1	At5g13910	LEP (LEAFY PETIOLE)	C.G.	S.X.	Please select
0.04	6e+0	30	HD04H12r_at	HD04H12r	-	-	8e-1	At3g22850	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	30	Contig10937_at	Contig10937	-	-	3e-10	At1g20490	AMP-dependent synthetase and ligase family protein	C.G.	S.X.	Please select
0.02	6e+0	30	Contig10849_at	Contig10849	-	-	3e-3	At5g26600	catalytic/ pyridoxal phosphate binding	C.G.	S.X.	Please select
0.01	6e+0	30	Contig7577_at	Contig7577	-	-	2e-4	At1g17940	-	C.G.	S.X.	Please select
0.04	6e+0	30	EBro03_SQ006_A01_at	EBro03_SQ006_A01	-	-	1e+1	At5g54930	AT hook motif-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At2g05520	815101	GRP-3 (GLYCINE-RICH PROTEIN 3)	Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	HgAffx.24046.1.S1_at	BF013803	-	-	2e-1	At4g00630	KEA2	C.G.	S.X.	Please select
0.20	2e-6	54	Oryza sativa	Os.18349.1.A1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.216057.1.S1_at	pmrna30617	hypothetical protein	-	4e+0	At2g21100	disease resistance-responsive protein-related / dirigent protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	2e-60	232	Triticum aestivum	Ta.10625.1.S1_at	BQ166138	-	-	6e+0	At3g57690	AGP23 (ARABINOGALACTAN-PROTEIN 23)	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1614208_at	CB348526	-	-	3e+0	At5g27090	AGL54	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.5770.2.S1_a_at	BG265985	protein disulfide isomerase	-	4e+0	At3g05490	RALFL22 (ralf-like 22)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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