Gene omics information

Query gene ID	HV08D21r_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.68	85.1	HV08D21r_at	HV08D21r	-	-	6e+0	At3g29305	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Contig5976_s_at	Contig5976	-	-	4e-58	At4g39520	GTP-binding protein, putative	S.X.	H.G.	Please select
0.72	87.4	HV12P19u_at	HV12P19u	-	-	2e-2	At1g72600	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.69	85.5	Contig6578_at	Contig6578	-	-	1e-27	At1g64650	-	S.X.	H.G.	Please select
0.67	84.7	Contig21185_at	Contig21185	-	-	4e-1	At3g24710	-	S.X.	H.G.	Please select
0.65	81.4	Contig5977_at	Contig5977	-	-	2e-21	At4g39520	GTP-binding protein, putative	S.X.	H.G.	Please select
0.64	80.9	Contig4999_at	Contig4999	-	-	6e-3	At3g22750	protein kinase, putative	S.X.	H.G.	Please select
0.64	80.9	Contig590_at	Contig590	-	-	1e+0	At4g09840	unknown protein	S.X.	H.G.	Please select
0.62	79.1	Contig4058_s_at	Contig4058	-	-	2e+0	At5g42070	unknown protein	S.X.	H.G.	Please select
0.60	77.3	HVSMEn0022J01r2_at	HVSMEn0022J01r2	-	-	6e-1	At3g29370	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.9	99.8	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
21.4	99.7	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
21.0	99.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
17.3	99.6	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
16.0	99.6	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
11.6	99.3	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.0	99.2	GSM398265	HS41-1_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.8	99.2	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
10.8	99.2	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
10.7	99.2	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	4e-15	79	Contig8244_s_at	Contig8244	AML6	-	1e-10	At5g61960	AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.01	1e+1	28	Contig5833_s_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.01	1e+1	28	Contig5833_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.04	1e+1	28	HV_CEb0001H04r2_at	HV_CEb0001H04r2	-	-	4e+0	At3g15480	unknown protein	C.G.	S.X.	Please select
0.04	1e+1	28	HS17B03u_at	HS17B03u	-	-	4e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	C.G.	S.X.	Please select
0.02	1e+1	28	Contig15549_at	Contig15549	-	-	5e-4	At4g14145	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	28	Contig11317_at	Contig11317	-	-	3e-9	At2g37860	LCD1 (LOWER CELL DENSITY 1)	C.G.	S.X.	Please select
0.02	1e+1	28	Contig1815_at	Contig1815	-	-	1e-11	At1g61520	LHCA3	C.G.	S.X.	Please select
0.03	5e+1	26	Contig5734_at	Contig5734	-	-	7e+0	At4g37409	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	6e+0	30	Arabidopsis thaliana	At3g29305	822588	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	36	Glycine max	HgAffx.9283.1.S1_at	CB379218	-	-	1e+0	At4g04404	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.05	1e+1	30	Oryza sativa	Os07g0615800	D23155	-	DNA-directed RNA polymerase, M/15 kDa subunitdomain containing protein	3e+0	At1g73350	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e+0	30	Populus trichocarpa	PtpAffx.77934.1.S1_at	CF237258	hypothetical protein	-	2e-11	At2g42960	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e+0	30	Triticum aestivum	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	C.G.	S.X.	Please select
0.06	8e+0	28	Vitis vinifera	1622185_at	CF209948	-	-	3e-2	At1g78915	binding	C.G.	S.X.	Please select
0.06	4e+1	26	Zea mays	ZmAffx.399.1.S1_at	AI676827	-	-	6e+0	At1g26921	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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