CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID HV04B24u_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 72.0 HV04B24u_at HV04B24u - - 2e+1 At5g65260 polyadenylate-binding protein family protein / PABP family protein S.X. H.G.
0.40 53.1 Z48624_x_at Z48624 - - 5e-4 At4g39260 GR-RBP8 S.X. H.G.
0.38 49.5 HY04C04u_at HY04C04u - - 7e-1 At1g09490 cinnamyl-alcohol dehydrogenase family / CAD family S.X. H.G.
0.25 28.9 S0000800150H08F1_x_at S0000800150H08F1 - - 9e-10 At5g35530 40S ribosomal protein S3 (RPS3C) S.X. H.G.
0.24 27.2 HT12H07u_x_at HT12H07u - - 8e+0 At5g64552 CPuORF22 (Conserved peptide upstream open reading frame 22) S.X. H.G.
0.17 16.9 Contig6402_at Contig6402 - - 4e-1 At1g65710 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.8 99.5 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
14.4 99.5 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
13.8 99.5 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.6 99.4 GSM282021 Malting_day4_Legacy_rep 2 GSE11200 Expression data from malting barley seeds
12.4 99.4 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
11.8 99.3 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
10.9 99.2 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.8 99.2 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
10.8 99.2 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.1 98.9 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 6e-7 54 baal34n21_x_at baal34n21 - - 9e-2 At1g56280 ATDI19 C.G. S.X.
0.03 3e-5 48 Contig14137_at Contig14137 - - 2e-1 At5g66780 unknown protein C.G. S.X.
0.03 1e-4 46 Contig3168_at Contig3168 - - 1e-24 At5g60860 AtRABA1f (Arabidopsis Rab GTPase homolog A1f) C.G. S.X.
0.06 5e-4 44 HV_CEb0014M10r2_at HV_CEb0014M10r2 - - 3e-4 At2g01180 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) C.G. S.X.
0.07 5e-4 44 Contig17124_at Contig17124 - - 6e-1 At3g20180 metal ion binding C.G. S.X.
0.04 2e-3 42 Contig9862_at Contig9862 - - 1e+0 At1g38630 unknown protein C.G. S.X.
0.08 8e-3 40 HVSMEl0010K13r2_at HVSMEl0010K13r2 - - 4e+0 At1g69380 unknown protein C.G. S.X.
0.06 8e-3 40 Contig19129_at Contig19129 - - 2e+0 At1g62250 unknown protein C.G. S.X.
0.03 8e-3 40 Contig10489_at Contig10489 - - 4e-2 At5g19930 integral membrane family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+1 30 Arabidopsis thaliana At5g65260 836651 polyadenylate-binding protein family protein / PABP family protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBA - - - C.G. S.X.
0.02 2e+0 34 Glycine max PsAffx.C380000006_at PsAffx.C380000006 - - 2e+0 At3g53970 proteasome inhibitor-related C.G. S.X.
0.14 5e-35 149 Oryza sativa Os09g0481600 AK108636.1 - Conserved hypothetical protein 6e-2 At2g36230 APG10 (ALBINO AND PALE GREEN 10) C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.200625.1.S1_at pmrna1218 hypothetical protein - 3e-23 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.66 1e-154 545 Triticum aestivum TaAffx.91928.1.S1_at BJ299326 - - 1e+0 At1g62333 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1618819_at CF373740 hypothetical protein LOC100255504 - 4e+0 At3g28070 nodulin MtN21 family protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.17726.1.A1_at CK370305 - - 1e+0 At1g55805 BolA-like family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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