Gene omics information

Query gene ID	HU14M07u_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	HU14M07u_s_at	HU14M07u	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	S.X.	H.G.	Please select
0.83	94.0	Contig828_s_at	Contig828	-	-	1e-26	At2g34430	LHB1B1	S.X.	H.G.	Please select
0.83	94.0	Contig5185_at	Contig5185	-	-	2e+0	At2g41480	electron carrier/ heme binding / peroxidase	S.X.	H.G.	Please select
0.83	94.0	Contig14821_at	Contig14821	-	-	4e-2	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.80	92.5	Contig9378_at	Contig9378	-	-	6e-10	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	S.X.	H.G.	Please select
0.80	92.5	Contig15036_at	Contig15036	-	-	1e-1	At3g07090	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.5	99.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
18.7	99.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
18.5	99.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.6	99.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.5	99.5	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.3	99.4	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.3	99.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.1	99.2	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.3	99.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	991	HU14M07u_at	HU14M07u	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	C.G.	S.X.	Please select
0.36	0	841	Contig8287_at	Contig8287	-	-	4e-65	At2g16440	DNA replication licensing factor, putative	C.G.	S.X.	Please select
0.03	8e-3	40	Contig20398_at	Contig20398	-	-	8e-3	At2g42620	MAX2 (MORE AXILLARY BRANCHES 2)	C.G.	S.X.	Please select
0.01	5e-1	34	Contig9077_at	Contig9077	-	-	1e-3	At3g17840	RLK902	C.G.	S.X.	Please select
0.03	5e-1	34	Contig25726_at	Contig25726	-	-	8e-2	At1g51940	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig17649_at	Contig17649	-	-	7e+0	At4g32320	APX6	C.G.	S.X.	Please select
0.04	2e+0	32	HF09N12r_at	HF09N12r	-	-	1e-1	At5g39330	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	HF13L09r_at	HF13L09r	-	-	3e+0	At4g10430	-	C.G.	S.X.	Please select
0.03	2e+0	32	Contig17590_at	Contig17590	-	-	7e-9	At5g28050	cytidine/deoxycytidylate deaminase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g65050	836629	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.59106.1.S1_at	BG508119	-	-	2e+0	At1g50350	-	C.G.	S.X.	Please select
0.06	4e-14	79	Oryza sativa	Os.47996.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.221892.1.S1_at	pmrna38998	hypothetical protein	-	2e-10	At4g27340	Met-10+ like family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	1e-55	216	Triticum aestivum	TaAffx.86805.1.S1_at	CA600310	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1622206_at	CF510827	hypothetical protein LOC100255112	-	1e+1	At5g66440	unknown protein	C.G.	S.X.	Please select
0.15	5e-7	54	Zea mays	ZmAffx.383.1.A1_at	AI673962	-	-	2e-1	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage