Gene omics information

Query gene ID	HU11B09u_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	HU11B09u_s_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	S.X.	H.G.	Please select
0.77	90.8	Contig9144_at	Contig9144	-	-	1e-15	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	S.X.	H.G.	Please select
0.59	75.8	HU11B09u_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	S.X.	H.G.	Please select
0.55	72.0	Contig14921_s_at	Contig14921	-	-	3e+0	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.50	66.9	Contig17293_at	Contig17293	-	-	1e-1	At5g57790	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig14296_at	Contig14296	-	-	4e+0	At1g07140	SIRANBP	S.X.	H.G.	Please select
0.43	56.4	Contig20510_at	Contig20510	-	-	4e+0	At4g00355	unknown protein	S.X.	H.G.	Please select
0.42	55.2	Contig12950_at	Contig12950	-	-	3e-6	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
54.1	100.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
41.3	99.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
32.5	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.6	99.5	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
11.1	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.0	98.7	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1072	HU11B09u_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	C.G.	S.X.	Please select
0.35	0	827	Contig9140_at	Contig9140	-	-	2e-2	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	C.G.	S.X.	Please select
0.11	1e-7	56	Contig17505_at	Contig17505	-	-	3e-1	At1g29195	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig1765_at	Contig1765	-	-	4e-1	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig18282_at	Contig18282	-	-	8e-2	At1g15840	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig15337_at	Contig15337	-	-	1e-2	At4g21366	ATP binding / protein tyrosine kinase	C.G.	S.X.	Please select
0.01	2e+0	32	Contig1522_at	Contig1522	-	-	2e-1	At3g44935	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Contig12354_at	Contig12354	-	-	9e+0	At5g22875	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Contig23219_at	Contig23219	-	-	1e-3	At1g62240	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-3	42	Arabidopsis thaliana	At4g20010	827746	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	F:single-stranded DNA binding;P:biological_process unknown;C:plastid chromosome, nucleoid;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.63395.2.S1_s_at	BF597240	-	-	2e-1	At1g49310	unknown protein	C.G.	S.X.	Please select
0.09	4e-5	50	Oryza sativa	Os02g0825700	AK073445.1	-	Conserved hypothetical protein	1e+0	At3g01980	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.3058.2.A1_at	BP936796	hypothetical protein	-	2e-14	At5g14310	AtCXE16 (Arabidopsis thaliana carboxyesterase 16)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	6e-89	327	Triticum aestivum	Ta.6758.1.A1_at	CA648299	-	-	7e-2	At1g53035	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1615498_at	CD010850	-	-	3e+0	At5g26170	WRKY50	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.20.1.A1_at	AI600385	-	-	3e+0	At4g02550	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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