Gene omics information

Query gene ID	HU10L19u_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	HU10L19u_at	HU10L19u	-	-	4e+0	At5g60400	unknown protein	S.X.	H.G.	Please select
0.19	19.6	Contig11960_at	Contig11960	-	-	1e+0	At1g54650	methyltransferase	S.X.	H.G.	Please select
0.07	5.8	Contig12359_at	Contig12359	-	-	8e-1	At4g12860	UNE14 (unfertilized embryo sac 14)	S.X.	H.G.	Please select
0.05	4.1	HV_CEa0017M22f_at	HV_CEa0017M22f	-	-	1e+1	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.04	3.4	Contig19021_at	Contig19021	-	-	9e-8	At1g78650	POLD3	S.X.	H.G.	Please select
0.03	2.6	Contig18167_at	Contig18167	-	-	2e-1	At5g35945	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	99.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.1	99.1	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.9	98.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	Contig13254_at	Contig13254	-	-	8e-4	At5g15950	adenosylmethionine decarboxylase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig5788_at	Contig5788	UDP-D-xylose epimerase 1	-	3e-6	At4g20460	NAD-dependent epimerase/dehydratase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEa0003H08r2_at	HVSMEa0003H08r2	-	-	4e+0	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig18746_at	Contig18746	-	-	8e-3	At2g29130	LAC2 (laccase 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8693_at	Contig8693	-	-	2e-1	At1g65540	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	7e+0	30	Contig6407_at	Contig6407	-	-	8e-6	At5g48220	indole-3-glycerol phosphate synthase, putative	C.G.	S.X.	Please select
0.02	7e+0	30	Contig22316_at	Contig22316	-	-	8e+0	At5g27940	WPP3 (WPP domain protein 3)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig12035_at	Contig12035	-	-	2e-4	At4g26180	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.03	7e+0	30	Contig5760_at	Contig5760	-	-	5e+0	At5g45170	CbbY protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e+0	32	Arabidopsis thaliana	At5g60400	836162	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.76776.1.S1_at	BF070829	-	-	2e-1	At5g43080	CYCA3	C.G.	S.X.	Please select
0.10	5e-47	188	Oryza sativa	OsAffx.13002.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.697.1.S1_at	CV250126	hypothetical protein	-	4e-7	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	9e-26	117	Triticum aestivum	TaAffx.64315.1.S1_at	BJ305099	-	-	3e+0	At5g60400	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1608988_at	CB345849	hypothetical protein LOC100249728	-	1e+0	At3g50560	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	7e+0	30	Zea mays	Zm.9541.1.A1_at	BM350357	hypothetical protein LOC100278387	-	6e+0	At5g60400	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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