Gene omics information

Query gene ID	HU04B19u_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	HU04B19u_at	HU04B19u	-	-	4e+0	At3g48480	cysteine-type peptidase	S.X.	H.G.	Please select
0.67	84.7	Contig12667_at	Contig12667	-	-	2e+0	At1g54540	-	S.X.	H.G.	Please select
0.53	69.7	Contig9645_at	Contig9645	-	-	4e-11	At4g26470	calcium ion binding	S.X.	H.G.	Please select
0.31	38.6	Contig9488_at	Contig9488	-	-	9e-16	At5g57960	GTP-binding family protein	S.X.	H.G.	Please select
0.23	26.1	Contig10802_at	Contig10802	-	-	4e-1	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select
0.20	21.1	Contig4650_s_at	Contig4650	-	-	5e-9	At5g36940	CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.7	99.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
12.4	99.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
9.9	99.1	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.1	97.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-1	34	HY03L11u_at	HY03L11u	-	-	9e-1	At2g28820	-	C.G.	S.X.	Please select
0.01	2e+0	32	Mla13_orf_3pr_x_at	Mla13_orf_3pr	-	-	2e+0	At1g80133	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	HU04B20u_at	HU04B20u	-	-	3e-1	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Mlk_3pri12_s_at	Mlk_3pri12	Mla7 protein	-	2e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Mla12DH_orf_3pri12_s_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Mla12DH_orf_3pri12_at	Mla12DH_orf_3pri12	-	-	6e-1	At4g23620	50S ribosomal protein-related	C.G.	S.X.	Please select
0.03	2e+0	32	EBro08_SQ010_H22_at	EBro08_SQ010_H22	-	-	1e+0	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig16096_at	Contig16096	-	-	8e+0	At5g62920	ARR6 (RESPONSE REGULATOR 6)	C.G.	S.X.	Please select
0.01	7e+0	30	AY009939_CDS-2_s_at	AY009939_CDS-2	-	-	4e-1	At3g43630	nodulin, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g48480	824007	cysteine-type peptidase	F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	GmaAffx.49490.1.A1_at	BE824429	-	-	2e-1	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	C.G.	S.X.	Please select
0.09	1e-4	48	Oryza sativa	Os.8318.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.149678.1.A1_at	AJ771832	hypothetical protein	-	3e-50	At5g64300	ATGCH	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	1e-98	359	Triticum aestivum	Ta.1103.1.A1_a_at	BF485248	-	-	1e+0	At5g53742	-	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1620552_at	CF568948	-	-	5e-2	At1g24050	unknown protein	C.G.	S.X.	Please select
0.10	2e-12	71	Zea mays	Zm.2879.1.S1_at	AF527609.1	chromdomain-containing protein CRD101	-	2e-1	At3g30220	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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