Gene omics information

Query gene ID	HT09D15r_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	98.7	HT09D15r_s_at	HT09D15r	-	-	3e+0	At5g46730	glycine-rich protein	S.X.	H.G.	Please select
0.35	45.1	Contig13863_at	Contig13863	-	-	9e-1	At1g04778	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig17591_at	Contig17591	-	-	1e-8	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	S.X.	H.G.	Please select
0.26	30.4	Contig16412_at	Contig16412	-	-	1e-13	At1g68100	IAR1 (IAA-ALANINE RESISTANT 1)	S.X.	H.G.	Please select
0.23	26.1	Contig21935_at	Contig21935	-	-	1e+0	At3g49700	ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9)	S.X.	H.G.	Please select
0.23	26.1	Contig16579_at	Contig16579	-	-	2e+0	At4g14695	unknown protein	S.X.	H.G.	Please select
0.22	24.2	Contig6879_at	Contig6879	-	-	4e-24	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	S.X.	H.G.	Please select
0.22	24.2	Contig8007_at	Contig8007	-	-	8e-1	At2g38610	KH domain-containing protein	S.X.	H.G.	Please select
0.18	18.2	Contig7798_at	Contig7798	-	-	7e-13	At4g31550	WRKY11	S.X.	H.G.	Please select
0.13	11.6	Contig11095_at	Contig11095	-	-	2e-4	At3g19895	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	99.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
8.2	98.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0	98.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.7	97.7	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.4	97.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
5.0	97.2	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	5e-161	565	Contig11624_at	Contig11624	-	-	1e+0	At2g04890	SCL21 (SCARECROW-LIKE 21)	C.G.	S.X.	Please select
0.53	5e-161	565	Contig11624_x_at	Contig11624	-	-	1e+0	At2g04890	SCL21 (SCARECROW-LIKE 21)	C.G.	S.X.	Please select
0.59	5e-161	565	Contig16799_s_at	Contig16799	-	-	2e+0	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	C.G.	S.X.	Please select
0.38	1e-139	494	Contig11625_at	Contig11625	-	-	5e-1	At1g29540	unknown protein	C.G.	S.X.	Please select
0.13	2e-34	145	HD01G16w_at	HD01G16w	-	-	5e+0	At5g23212	-	C.G.	S.X.	Please select
0.04	2e-12	71	Contig12127_s_at	Contig12127	-	-	2e-1	At5g26617	-	C.G.	S.X.	Please select
0.04	6e-6	50	Contig13958_at	Contig13958	-	-	2e+0	At3g29370	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	38	EBro04_SQ002_K10_at	EBro04_SQ002_K10	-	-	3e+0	At5g49250	beta-galactosidase	C.G.	S.X.	Please select
0.02	1e-1	36	Contig9988_at	Contig9988	-	-	2e-13	At4g05160	4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g46730	834716	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e+0	32	Glycine max	PsAffx.CL736Contig1_s_at	PsAffx.CL736Contig1	-	-	1e+0	At2g38790	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	36	Oryza sativa	Os01g0931600	9629.m06975	-	-	2e-2	At3g14260	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-1	36	Populus trichocarpa	PtpAffx.90746.1.A1_at	CK094582	-	-	1e+1	At3g02640	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-8	59	Triticum aestivum	TaAffx.31551.2.S1_at	CD901134	-	-	3e+0	At5g10350	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1615998_at	CF610017	(+)-valencene synthase	-	1e+0	At2g36180	calmodulin-related protein, putative	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	Zm.9059.1.A1_at	BM341108	-	-	1e+0	At1g02840	SR1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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