Gene omics information

Query gene ID	HS17M12u_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	HS17M12u_s_at	HS17M12u	-	-	4e+0	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	S.X.	H.G.	Please select
0.55	72.0	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select
0.55	72.0	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	S.X.	H.G.	Please select
0.50	66.9	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	S.X.	H.G.	Please select
0.47	62.2	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.32	40.3	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	99.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.2	99.0	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.2	98.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.1	97.3	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.4	96.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	0	908	Contig11155_at	Contig11155	-	-	8e-1	At4g15140	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	38	Contig10711_at	Contig10711	-	-	2e-4	At5g10650	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig23683_at	Contig23683	-	-	5e-1	At4g00200	DNA binding	C.G.	S.X.	Please select
0.02	2e+0	32	Contig17899_at	Contig17899	-	-	2e+0	At4g20690	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8538_at	Contig8538	-	-	4e-2	At2g04038	AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig6216_at	Contig6216	-	-	2e-34	At5g20920	EIF2 BETA	C.G.	S.X.	Please select
0.01	8e+0	30	Contig8331_s_at	Contig8331	-	-	2e-5	At1g55255	-	C.G.	S.X.	Please select
0.02	8e+0	30	Contig17283_s_at	Contig17283	-	-	5e-1	At2g20613	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Contig12465_at	Contig12465	-	-	3e-2	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g23250	821904	MYB15 (MYB DOMAIN PROTEIN 15)	Member of the R2R3 factor gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	4e-4	46	Glycine max	Gma.7179.1.S1_at	AW348714	-	-	4e+0	At3g53530	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.10	4e-42	173	Oryza sativa	Os02g0167500	AK069161.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	7e-16	At3g54230	nucleic acid binding / nucleotide binding / zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.203343.1.S1_s_at	pmrna6653	hypothetical protein	-	7e-1	At2g03010	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	6e-64	244	Triticum aestivum	TaAffx.54243.1.S1_at	CA684049	-	-	9e-1	At5g01790	unknown protein	C.G.	S.X.	Please select
0.03	8e-2	36	Vitis vinifera	1616751_at	CF404106	hypothetical protein LOC100268151	-	6e+0	At5g15790	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.41	7e-34	143	Zea mays	Zm.14792.1.A1_at	AI666236	-	-	4e+0	At3g62340	WRKY68	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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