Gene omics information

Query gene ID	HS05I21u_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	HS05I21u_s_at	HS05I21u	-	-	4e+0	At3g01322	-	S.X.	H.G.	Please select
0.91	98.1	Contig9899_at	Contig9899	-	-	4e-1	At1g65430	zinc finger protein-related	S.X.	H.G.	Please select
0.80	92.5	Contig7691_at	Contig7691	pathogen induced protein 2-4	-	4e-2	At2g21620	RD2	S.X.	H.G.	Please select
0.60	77.3	Contig26234_at	Contig26234	-	-	1e-3	At2g35360	ubiquitin family protein	S.X.	H.G.	Please select
0.33	42.6	Contig2747_at	Contig2747	-	-	3e-19	At1g08450	CRT3 (CALRETICULIN 3)	S.X.	H.G.	Please select
0.29	35.5	Contig122_at	Contig122	-	-	9e-27	At5g59690	histone H4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.6	99.8	GSM130803	JA, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
11.2	99.2	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
11.0	99.2	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
10.0	99.1	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.9	99.1	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
9.9	99.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.9	99.1	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
9.8	99.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
9.5	99.0	GSM130805	JA and salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
9.1	98.9	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	874	HS05I21u_at	HS05I21u	-	-	4e+0	At3g01322	-	C.G.	S.X.	Please select
0.35	0	676	Contig2622_at	Contig2622	-	-	4e-3	At1g18140	LAC1 (Laccase 1)	C.G.	S.X.	Please select
0.02	4e-1	34	Contig10400_s_at	Contig10400	-	-	4e-5	At1g26850	dehydration-responsive family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig18338_at	Contig18338	-	-	9e+0	At5g52570	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig8656_at	Contig8656	-	-	9e+0	At5g57535	unknown protein	C.G.	S.X.	Please select
0.01	7e+0	30	Contig7698_at	Contig7698	-	-	9e-4	At3g10770	nucleic acid binding	C.G.	S.X.	Please select
0.03	7e+0	30	HV_CEb0010P08r2_at	HV_CEb0010P08r2	-	-	3e+0	At3g46230	ATHSP17.4	C.G.	S.X.	Please select
0.02	7e+0	30	Contig13834_at	Contig13834	-	-	1e-1	At5g04660	CYP77A4	C.G.	S.X.	Please select
0.04	7e+0	30	HS04L14u_at	HS04L14u	-	-	2e+0	At2g21237	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At3g01322	5007971	-	Encodes a ECA1 gametogenesis related family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	8e-2	38	Glycine max	Gma.5086.1.A1_at	BI970877	-	-	9e-1	At3g01010	UDP-glucose/GDP-mannose dehydrogenase family protein	C.G.	S.X.	Please select
0.03	2e-3	44	Oryza sativa	Os11g0641800	AK066963.1	-	Multicopper oxidase, type 1 domain containingprotein	3e-1	At2g38080	IRX12 (IRREGULAR XYLEM 12)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.44574.1.A1_at	CV226590	laccase 90c	-	1e-3	At5g07130	LAC13 (laccase 13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	4e+0	32	Triticum aestivum	Ta.9136.2.S1_at	CA747260	-	-	3e-2	At5g36240	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1618481_at	CF213085	hypothetical protein LOC100266840	-	1e-13	At1g65320	CBS domain-containing protein	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	ZmAffx.205.1.A1_at	AI670190	hypothetical protein LOC100276892	-	8e-1	At4g17520	nuclear RNA-binding protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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