Gene omics information

Query gene ID	HP01E21w_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	95.7	HP01E21w_at	HP01E21w	-	-	2e-1	At3g20340	-	S.X.	H.G.	Please select
0.67	84.7	Contig11763_s_at	Contig11763	-	-	7e-2	At4g09270	unknown protein	S.X.	H.G.	Please select
0.51	67.5	Contig5058_x_at	Contig5058	RNase S-like protein	-	4e+0	At1g10990	unknown protein	S.X.	H.G.	Please select
0.49	63.7	Contig7382_at	Contig7382	-	-	2e-13	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	S.X.	H.G.	Please select
0.46	61.0	Contig18844_at	Contig18844	-	-	2e+0	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	S.X.	H.G.	Please select
0.44	58.9	HK06N02r_s_at	HK06N02r	-	-	3e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	S.X.	H.G.	Please select
0.44	58.9	Contig22469_at	Contig22469	-	-	2e+0	At3g49070	unknown protein	S.X.	H.G.	Please select
0.41	53.9	HVSMEa0003J04r2_s_at	HVSMEa0003J04r2	-	-	1e-1	At2g01260	unknown protein	S.X.	H.G.	Please select
0.41	53.9	Contig5928_at	Contig5928	-	-	1e-4	At5g19400	SMG7	S.X.	H.G.	Please select
0.41	53.9	Contig11329_at	Contig11329	-	-	8e-3	At5g44570	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
132.9	100.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
62.6	100.0	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
45.1	99.9	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
34.1	99.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
21.2	99.7	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
19.4	99.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.1	99.1	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.2	99.0	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.5	98.8	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	890	HP01E21w_s_at	HP01E21w	-	-	2e-1	At3g20340	-	C.G.	S.X.	Please select
0.20	1e-4	46	Contig447_at	Contig447	-	-	4e+0	At5g44610	MAP18 (Microtubule-associated Protein 18)	C.G.	S.X.	Please select
0.04	5e-4	44	Contig4423_at	Contig4423	-	-	4e+0	At5g58400	peroxidase, putative	C.G.	S.X.	Please select
0.12	5e-4	44	HVSMEf0016A06r2_at	HVSMEf0016A06r2	-	-	4e+0	At3g28674	unknown protein	C.G.	S.X.	Please select
0.14	2e-3	42	EBro08_SQ005_A14_at	EBro08_SQ005_A14	-	-	4e+0	At3g28674	unknown protein	C.G.	S.X.	Please select
0.16	2e-3	42	Contig34_s_at	Contig34	-	-	4e+0	At3g28674	unknown protein	C.G.	S.X.	Please select
0.13	2e-3	42	Contig50_x_at	Contig50	-	-	3e+0	At5g44610	MAP18 (Microtubule-associated Protein 18)	C.G.	S.X.	Please select
0.14	2e-3	42	Contig1010_at	Contig1010	-	-	4e+0	At5g44610	MAP18 (Microtubule-associated Protein 18)	C.G.	S.X.	Please select
0.07	7e-3	40	Contig3903_x_at	Contig3903	hypothetical protein LOC732694	-	3e+0	At1g65150	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-1	36	Arabidopsis thaliana	At3g20340	821578	-	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.73183.1.S1_at	BI700424	-	-	8e-1	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.04	1e-4	48	Oryza sativa	OsAffx.13552.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-3	42	Populus trichocarpa	PtpAffx.43398.1.A1_at	CV273664	hypothetical protein	-	2e-2	At1g28695	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	2e-75	282	Triticum aestivum	Ta.24632.1.S1_at	BE405372	-	-	3e-1	At2g46250	myosin heavy chain-related	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1607082_at	CF516413	hypothetical protein LOC100260390	-	3e-1	At3g48360	BT2 (BTB AND TAZ DOMAIN PROTEIN 2)	C.G.	S.X.	Please select
0.05	4e-4	44	Zea mays	Zm.15278.1.S1_at	BM380074	hypothetical protein LOC100278126	-	1e+1	At4g16380	metal ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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